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Sed0015219 (gene) of Chayote v1 genome

Gene IDSed0015219
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG02:36774807..36775223
RNA-Seq ExpressionSed0015219
SyntenySed0015219
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157449.1 uncharacterized protein LOC111024145 [Momordica charantia]1.9e-2047.15Show/hide
Query:  SYSYFGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTT
        +Y YF T+  S+I++++ +K   EN T  K N+NTILVVD+ +F+L +ECP   AP PNA +   +A DRW  AN+K+ VY L S+SD+L+KK E++VT 
Subjt:  SYSYFGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTT

Query:  LEMMRAFYEIFGQSSSSVKHDAL
         E+M +  +IF Q S   +HDAL
Subjt:  LEMMRAFYEIFGQSSSSVKHDAL

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]2.3e-2147.9Show/hide
Query:  FGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMM
        F     S I ++++DK   +N    K+N+NTILV+D+ +FVL +ECPP  APAPNA +   +A DRW  ANEK+RVY LAS+S++L+KK E + TT E+M
Subjt:  FGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMM

Query:  RAFYEIFGQSSSSVKHDAL
         +   +FGQ S+++ HDA+
Subjt:  RAFYEIFGQSSSSVKHDAL

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]6.0e-2250.44Show/hide
Query:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI
        S I ++++DK   +N    K+N+NTILV+D+ +FVL +ECPPAL  APN+ Q   +A DRW  ANEK+RVY LAS+SD+L+KK E + T  E+M +   +
Subjt:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI

Query:  FGQSSSSVKHDAL
        FGQ S+S+ HDA+
Subjt:  FGQSSSSVKHDAL

XP_022159023.1 uncharacterized protein LOC111025468 [Momordica charantia]3.3e-2048.67Show/hide
Query:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI
        S+I ++++DK   +N    K+N+NTILV+D+ + VL +ECPP  APAPNA +   EA DRW  AN+K+RVY LAS+SD+L+KK E + T  EMM +   +
Subjt:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI

Query:  FGQSSSSVKHDAL
         GQ  +S+ HDA+
Subjt:  FGQSSSSVKHDAL

XP_038880476.1 uncharacterized protein LOC120072136 [Benincasa hispida]9.6e-2047.79Show/hide
Query:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI
        S++  ++++K   +N    K+N+NTILV+D+ KFVL +ECPP   PA N  +   +A DRW  ANEK++VY LAS+SDIL+KK E +V   E+M +   +
Subjt:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI

Query:  FGQSSSSVKHDAL
        FGQ SSS  HDA+
Subjt:  FGQSSSSVKHDAL

TrEMBL top hitse value%identityAlignment
A0A6J1DWG6 uncharacterized protein LOC1110250211.1e-2147.9Show/hide
Query:  FGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMM
        F     S I ++++DK   +N    K+N+NTILV+D+ +FVL +ECPP  APAPNA +   +A DRW  ANEK+RVY LAS+S++L+KK E + TT E+M
Subjt:  FGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMM

Query:  RAFYEIFGQSSSSVKHDAL
         +   +FGQ S+++ HDA+
Subjt:  RAFYEIFGQSSSSVKHDAL

A0A6J1DWI4 uncharacterized protein LOC1110241459.4e-2147.15Show/hide
Query:  SYSYFGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTT
        +Y YF T+  S+I++++ +K   EN T  K N+NTILVVD+ +F+L +ECP   AP PNA +   +A DRW  AN+K+ VY L S+SD+L+KK E++VT 
Subjt:  SYSYFGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTT

Query:  LEMMRAFYEIFGQSSSSVKHDAL
         E+M +  +IF Q S   +HDAL
Subjt:  LEMMRAFYEIFGQSSSSVKHDAL

A0A6J1DXP1 uncharacterized protein LOC1110254681.6e-2048.67Show/hide
Query:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI
        S+I ++++DK   +N    K+N+NTILV+D+ + VL +ECPP  APAPNA +   EA DRW  AN+K+RVY LAS+SD+L+KK E + T  EMM +   +
Subjt:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI

Query:  FGQSSSSVKHDAL
         GQ  +S+ HDA+
Subjt:  FGQSSSSVKHDAL

A0A6J1DXQ5 uncharacterized protein LOC1110244576.1e-2047.79Show/hide
Query:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI
        S++ +++++K    N +  KNN+NTILVVD+ +FVL +ECP    PA NA +N  EA DRW  AN+K+RVY LAS++D+LAKK E ++T  E+M +   +
Subjt:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI

Query:  FGQSSSSVKHDAL
        FG+ SS+++H+AL
Subjt:  FGQSSSSVKHDAL

A0A6J1E205 uncharacterized protein LOC1110252582.9e-2250.44Show/hide
Query:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI
        S I ++++DK   +N    K+N+NTILV+D+ +FVL +ECPPAL  APN+ Q   +A DRW  ANEK+RVY LAS+SD+L+KK E + T  E+M +   +
Subjt:  SLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEMMRAFYEI

Query:  FGQSSSSVKHDAL
        FGQ S+S+ HDA+
Subjt:  FGQSSSSVKHDAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCAAACTGAAATGTTCTTATTCTTATTTTGGTACAACGCCTAAATCACTTATCTCGATAATGTCAACTGACAAATCAACGAGAGAAAATACTACATGGAATAA
AAACAATATCAACACGATTCTTGTTGTCGATGAAAAAAAGTTTGTTCTCATGGATGAATGCCCTCCGGCACTGGCACCAGCACCTAATGCAGAACAAAATTTTTGTGAAG
CGCGTGATCGTTGGCATAATGCGAATGAAAAGTCAAGGGTCTATTTCTTGGCAAGTGTGTCGGACATTCTAGCCAAGAAACTAGAGAACATTGTAACTACTTTAGAGATG
ATGAGAGCCTTCTATGAAATTTTTGGGCAGTCATCGTCTTCGGTAAAGCATGATGCTCTCTGGGTCATAAAAGACAAAGCTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCAAACTGAAATGTTCTTATTCTTATTTTGGTACAACGCCTAAATCACTTATCTCGATAATGTCAACTGACAAATCAACGAGAGAAAATACTACATGGAATAA
AAACAATATCAACACGATTCTTGTTGTCGATGAAAAAAAGTTTGTTCTCATGGATGAATGCCCTCCGGCACTGGCACCAGCACCTAATGCAGAACAAAATTTTTGTGAAG
CGCGTGATCGTTGGCATAATGCGAATGAAAAGTCAAGGGTCTATTTCTTGGCAAGTGTGTCGGACATTCTAGCCAAGAAACTAGAGAACATTGTAACTACTTTAGAGATG
ATGAGAGCCTTCTATGAAATTTTTGGGCAGTCATCGTCTTCGGTAAAGCATGATGCTCTCTGGGTCATAAAAGACAAAGCTAGTTAG
Protein sequenceShow/hide protein sequence
MEIKLKCSYSYFGTTPKSLISIMSTDKSTRENTTWNKNNINTILVVDEKKFVLMDECPPALAPAPNAEQNFCEARDRWHNANEKSRVYFLASVSDILAKKLENIVTTLEM
MRAFYEIFGQSSSSVKHDALWVIKDKAS