; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0015250 (gene) of Chayote v1 genome

Gene IDSed0015250
OrganismSechium edule (Chayote v1)
Descriptionphotosystem I reaction center subunit IV, chloroplastic-like
Genome locationLG03:43436980..43439230
RNA-Seq ExpressionSed0015250
SyntenySed0015250
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651724.1 hypothetical protein Csa_006032 [Cucumis sativus]3.6e-4878.87Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTAATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDV
        MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RA+D+ A P AATA      EEPKPKPAPIGPKRGAKVKILR+ESYW+KDV
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTAATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDV

Query:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Subjt:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

KAG6598956.1 Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.6e-4678.52Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKL-SNSVAFSPKIANSISRFLVRAADDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVD
        MAASNLSCIASG++IPS PTISSSS   S+S A  P  + S SRF++RA  D AAP  A A EEPKPKP PIGPKRGAKVKILR+ESYW+KD+GSVVTVD
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKL-SNSVAFSPKIANSISRFLVRAADDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVD

Query:  QDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        QDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Subjt:  QDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_004152807.2 photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus]3.6e-4878.87Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTAATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDV
        MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RA+D+ A P AATA      EEPKPKPAPIGPKRGAKVKILR+ESYW+KDV
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTAATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDV

Query:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Subjt:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_008441802.1 PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]9.0e-4778.62Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA--------DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWF
        MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RAA           AAP AATA EEPKPKPAPIGPKRGAKVKILR+ESYW+
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA--------DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWF

Query:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_038889433.1 photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida]3.4e-4677.93Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA--------DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWF
        MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RAA           AAP AATA EEPKPKPAPIGPKRGAKVKILR+ESYW+
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA--------DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWF

Query:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        KDVGSVVTVDQDPNTRYPVVVRF+KVNYASVSTNNYALDEIEEVA
Subjt:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein1.8e-4878.87Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTAATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDV
        MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RA+D+ A P AATA      EEPKPKPAPIGPKRGAKVKILR+ESYW+KDV
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTAATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDV

Query:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Subjt:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like4.3e-4778.62Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA--------DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWF
        MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RAA           AAP AATA EEPKPKPAPIGPKRGAKVKILR+ESYW+
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA--------DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWF

Query:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1CRI6 photosystem I reaction center subunit IV, chloroplastic-like3.7e-4679.58Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLV-RAADDGAAP-------TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDV
        MAA+NLSCIASG+VIPSS TISSSS+L+ SVAF PK  N ISR LV RAA D AAP       TA   +EE KPKPAPIGPKRGAKVKILR+ESYW+KDV
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLV-RAADDGAAP-------TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDV

Query:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  GSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1FC09 photosystem I reaction center subunit IV, chloroplastic-like6.9e-4578.47Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS---RFLVR-AADDGAAP------TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFK
        MAASNLSCIASG++IPSS TISSSS+ S SVAF PK + SIS   R +VR AAD+ AAP      TA    E PKPKPAPIGPKRG KVKILRRESYW+K
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS---RFLVR-AADDGAAP------TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like1.1e-4579.17Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS---RFLVR-AADDGAAP------TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFK
        MAASNLSCIASG++IPSSPTISSSS+ S SVAF PK + SIS   R +VR AAD+ AAP      TA    E PKPKPAPIGPKRG KVKILRRESYW+K
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS---RFLVR-AADDGAAP------TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic2.1e-3070.1Show/hide
Query:  SRFLVRAADDGAAPTAATALEEPKP----KPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        +R +VRAA++ AA  AA + E   P    KP PIGPKRG+KV+I+R+ESYW+K VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYALDEI+EVA
Subjt:  SRFLVRAADDGAAPTAATALEEPKP----KPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

P13194 Photosystem I reaction center subunit IV, chloroplastic2.0e-2852.7Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLVRAADDGAA-------------PTAATALEEP-KPKPAPIGPKRGAKVKILRRES
        MA++N++   S  ++ +     ++  +S+ V+F P  +N +   LV  A++  A             P AA A +EP K KP P GPKRG KVKILRRES
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLVRAADDGAA-------------PTAATALEEP-KPKPAPIGPKRGAKVKILRRES

Query:  YWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        YW+   GSVVTVDQDPNTRYPVVVRF KVNYA VSTNNYALDEI+EVA
Subjt:  YWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Q41228 Photosystem I reaction center subunit IV A, chloroplastic7.2e-3155.63Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAF---SPKIANSISRFLVRAADDGAAPTAATALEEP------KPKPAPIGPKRGAKVKILRRESYWFKD
        MA+ N++  AS  ++ ++P ++S++  S +      S    ++  R +VRAA++ AAP AA A  EP        KP PIGPKRG KV+ILR+ESYW+K 
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAF---SPKIANSISRFLVRAADDGAAPTAATALEEP------KPKPAPIGPKRGAKVKILRRESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
         GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDEIEEV
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q41229 Photosystem I reaction center subunit IV B, chloroplastic8.5e-3256.34Show/hide
Query:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS----RFLVRAADDGAAPTA-ATALEEPKP----KPAPIGPKRGAKVKILRRESYWFKD
        MA+S+++  ASG ++ +    +S++    S+ F     N+ +    R +VRAA++ A P A ATA  E  P    KP PIGPKRG KV++LR+ESYW+K 
Subjt:  MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS----RFLVRAADDGAAPTA-ATALEEPKP----KPAPIGPKRGAKVKILRRESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
        VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDE+EEV
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic1.7e-3261.03Show/hide
Query:  VIPSSPT-ISSSSKLSNSVAFSPKIANSISRFLVRAADD--------------GAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTV
        V+P++ T ++ +S   +SV+F P + N+ SR +VRAA+D               AAP  ATA    KPKP PIGPKRG+KVKILRRESYWFK+VGSVV V
Subjt:  VIPSSPT-ISSSSKLSNSVAFSPKIANSISRFLVRAADD--------------GAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTV

Query:  DQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        DQDP TRYPVVVRF KVNYA++STNNYALDE+EEVA
Subjt:  DQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-23.1e-2953.85Show/hide
Query:  LSCIASGLVIPSSPTIS---SSSKLSNSVAFSPKIANSISRFLVRAADDGAAPTAA------TALEEP------KPKPAPIGPKRGAKVKILRRESYWFK
        ++  A+G ++ ++   +    SSK +  V+F P + +  SR +VRAA+D    TA+      TA   P      K KP PIGPKRG+KVKILR+ESYW+K
Subjt:  LSCIASGLVIPSSPTIS---SSSKLSNSVAFSPKIANSISRFLVRAADDGAAPTAA------TALEEP------KPKPAPIGPKRGAKVKILRRESYWFK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
        +VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEV
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein1.2e-3361.03Show/hide
Query:  VIPSSPT-ISSSSKLSNSVAFSPKIANSISRFLVRAADD--------------GAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTV
        V+P++ T ++ +S   +SV+F P + N+ SR +VRAA+D               AAP  ATA    KPKP PIGPKRG+KVKILRRESYWFK+VGSVV V
Subjt:  VIPSSPT-ISSSSKLSNSVAFSPKIANSISRFLVRAADD--------------GAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTV

Query:  DQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        DQDP TRYPVVVRF KVNYA++STNNYALDE+EEVA
Subjt:  DQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCAAGAT
TGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGCCCCA
AGAGAGGTGCCAAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGACCCAAACACTCGATATCCTGTTGTGGTT
AGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA
mRNA sequenceShow/hide mRNA sequence
CAGAAAAGGATGACGCTATCCTTAGAATATGGATATGGTGTACAGATGGCAGCATCCAATTGGCTGGAAACCCAAGAGGAGAAAATGATACAACTGATTCCTTCTCCCTG
AATTTGTGGTTATGATTAGTTTATCTCATAGTTGAAACCCCCTTCTCCAAATACCCAATTCATTCTCAAGCTTTGTTTTCCTTGAACAGACACATATTGATAGACTTAGC
CGCCATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCA
AGATTGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGC
CCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGACCCAAACACTCGATATCCTGTTGT
GGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTGTTTTGTGCTTTTGTGTATCTTTTAGT
GAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTTCTCTCTTCAATGAGTGTGTTGCTTAAGCTTGTGGTGCTTTGTCTAATTGTTTTGGTATCCATCTCAAGCT
GCATCACAAACGCCATACAAGTCAAGATTAGAAATATTGTGTGATTTGTTGACGACAAAGTAAAGTATATTCTCTTTATAGCTTTTATGATTTTGGCCACTAGAATTTGG
AGTTTCCTAGCAAGCTTTGTTCACAACTTGAACAATGTGTGGGTGTGTGAGTATCAGATATTGAAATGATCTAAAGCACGAGTTGCTACTATTGCGAACGAAGAC
Protein sequenceShow/hide protein sequence
MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLVRAADDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVV
RFNKVNYASVSTNNYALDEIEEVA