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Sed0015260 (gene) of Chayote v1 genome

Gene IDSed0015260
OrganismSechium edule (Chayote v1)
Descriptionthionin-like protein 2
Genome locationLG11:28181324..28182562
RNA-Seq ExpressionSed0015260
SyntenySed0015260
Gene Ontology termsNA
InterPro domainsIPR038975 - Thionin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575553.1 Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]7.8e-1747.37Show/hide
Query:  MKSFVVLCLVLSLVV--SKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKG
        MK+ +V CLVLS VV      ++ +   +CY  CI      E  F C +CI  C+++  + +PM+  HMDN YFCKLGCS SRC  L   NHP    +KG
Subjt:  MKSFVVLCLVLSLVV--SKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKG

Query:  CVNSCSQRCTNTMN
        CVNSCS  CTN MN
Subjt:  CVNSCSQRCTNTMN

KAG6575558.1 hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia]4.7e-1451.16Show/hide
Query:  DCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTNTMN
        +CY  CI      E  F C +CI  C+++  + +PM+  HMDN YFCKLGCS SRC  L   NHP    +KGCVNSCS  CTN MN
Subjt:  DCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTNTMN

KAG7014099.1 hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-1747.37Show/hide
Query:  MKSFVVLCLVLSLVV--SKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKG
        MK+ +V CLVLS VV      ++ +   +CY  CI     +E  F C +CI  C+++  + +PM+  HMDN YFCKLGCS SRC  L   NHP    +KG
Subjt:  MKSFVVLCLVLSLVV--SKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKG

Query:  CVNSCSQRCTNTMN
        CVNSCS  CTN MN
Subjt:  CVNSCSQRCTNTMN

XP_008461038.1 PREDICTED: beta-hordothionin-like [Cucumis melo]7.6e-1239.06Show/hide
Query:  MKSFVVLCLVLS-LVVSKS-------------TSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLS-PMELRHMDNGYFCKLGCSVSRCT--
        MKS  VLCL+LS LVV KS                +  S+ CY++C+   C  +G+F C +C+  C +   + S       MDN  FCK+GC+ S CT  
Subjt:  MKSFVVLCLVLS-LVVSKS-------------TSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLS-PMELRHMDNGYFCKLGCSVSRCT--

Query:  ----NLRTNNHPVKGCVNSCSQRCTNTM
            N  ++   VKGCV+SCSQRCT++M
Subjt:  ----NLRTNNHPVKGCVNSCSQRCTNTM

XP_038897055.1 thionin-like protein 2 [Benincasa hispida]3.4e-1244.64Show/hide
Query:  MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA----IEGLFSC-GMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----
        MKS VV+CL++SLV  +ST+   +  DCY  C  G CA    I  L +C   C+  C + P   S M+  HMD  YFCKLGC+ S CTN  T   P    
Subjt:  MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA----IEGLFSC-GMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----

Query:  VKGCVNSCSQRC
        VK CV+SC ++C
Subjt:  VKGCVNSCSQRC

TrEMBL top hitse value%identityAlignment
A0A059AI82 Uncharacterized protein4.0e-1143.36Show/hide
Query:  MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI---EGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----V
        +KS  ++CLVL L + +S +   +  DCY  C   +CAI     LFSC + C+ +C++ P+D     L   D  YFCKLGC+ S CTNL T ++P    V
Subjt:  MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI---EGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----V

Query:  KGCVNSCSQRCTN
         GCVNSCS+ CT+
Subjt:  KGCVNSCSQRCTN

A0A1S3CDB8 beta-hordothionin-like3.7e-1239.06Show/hide
Query:  MKSFVVLCLVLS-LVVSKS-------------TSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLS-PMELRHMDNGYFCKLGCSVSRCT--
        MKS  VLCL+LS LVV KS                +  S+ CY++C+   C  +G+F C +C+  C +   + S       MDN  FCK+GC+ S CT  
Subjt:  MKSFVVLCLVLS-LVVSKS-------------TSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLS-PMELRHMDNGYFCKLGCSVSRCT--

Query:  ----NLRTNNHPVKGCVNSCSQRCTNTM
            N  ++   VKGCV+SCSQRCT++M
Subjt:  ----NLRTNNHPVKGCVNSCSQRCTNTM

A0A5E4GD16 PREDICTED: thionin5.8e-1041.67Show/hide
Query:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI--EGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVN
        V++CLVL LV+ +ST+Q      CY  C  G+C +       CG+ C+  C+LTP    P +    ++ +FCKLGC+ S CTN+ T ++P    VK CV+
Subjt:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI--EGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVN

Query:  SCSQRCTN
        SCS  CTN
Subjt:  SCSQRCTN

A0A6J1KDK0 thionin-like protein 26.2e-1243.24Show/hide
Query:  MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAIE---GLFSC-GMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----V
        MKS VV+C +LSLV  +ST+   S   CY  C   VCAI     + +C G C+ +C+   +  +P +L H+D  YFCKLGC+ S CT   T   P    V
Subjt:  MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAIE---GLFSC-GMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----V

Query:  KGCVNSCSQRC
        + CVNSCS+ C
Subjt:  KGCVNSCSQRC

M5XBV6 Uncharacterized protein5.8e-1041.67Show/hide
Query:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI--EGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVN
        V++CLVL LV+ +ST+Q      CY  C  G+C +       CG+ C+  C+LTP    P +    ++ +FCKLGC+ S CTN+ T ++P    VK CV+
Subjt:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI--EGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVN

Query:  SCSQRCTN
        SCS  CTN
Subjt:  SCSQRCTN

SwissProt top hitse value%identityAlignment
A8MRP4 Thionin-like protein 21.1e-0527.78Show/hide
Query:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA---IEGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCV
        V++ +V+  +++++ +Q++   +CY  C+    A         C   C   C+  P+  S       ++ YFCKLGC+   C +L +  +P    V  CV
Subjt:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA---IEGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCV

Query:  NSCSQRCT
        +SCS +CT
Subjt:  NSCSQRCT

Arabidopsis top hitse value%identityAlignment
AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.7.8e-0727.78Show/hide
Query:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA---IEGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCV
        V++ +V+  +++++ +Q++   +CY  C+    A         C   C   C+  P+  S       ++ YFCKLGC+   C +L +  +P    V  CV
Subjt:  VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA---IEGLFSCGM-CIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCV

Query:  NSCSQRCT
        +SCS +CT
Subjt:  NSCSQRCT

AT1G12672.1 unknown protein3.3e-0544Show/hide
Query:  SPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN
        S  E+ H  N Y+CKLGCS   C +L +  +P    V  CV+SCS +C+N
Subjt:  SPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN

AT1G12672.2 unknown protein3.0e-0639.13Show/hide
Query:  FSCGMCIVNCVLTPNDL--SPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN
        F    CI  C+  P+    S  E+ H  N Y+CKLGCS   C +L +  +P    V  CV+SCS +C+N
Subjt:  FSCGMCIVNCVLTPNDL--SPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGGTGTCTG
CGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACTTTTGCA
AGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAACTAA
mRNA sequenceShow/hide mRNA sequence
GAGAAAATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGG
TGTCTGCGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACT
TTTGCAAGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAAC
TAA
Protein sequenceShow/hide protein sequence
MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHPVKGCVNSCSQRCTNTMN