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Sed0015282 (gene) of Chayote v1 genome

Gene IDSed0015282
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG13:19087666..19089226
RNA-Seq ExpressionSed0015282
SyntenySed0015282
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583307.1 General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]4.7e-1967.86Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPVLAKKYGPE SHLWN  VDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
KAG7019216.1 hypothetical protein SDJN02_18174, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-1967.86Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPVLAKKYGPE SHLWN  VDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
XP_022156577.1 uncharacterized protein LOC111023455 [Momordica charantia]1.9e-2070.24Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPV+AKKYGPEVSHLWNR VDQTFGPMIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
XP_022964845.1 uncharacterized protein LOC111464826 [Cucurbita moschata]4.7e-1967.86Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPVLAKKYGPE SHLWN  VDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
XP_023519919.1 uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo]4.7e-1967.86Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPVLAKKYGPE SHLWN  VDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
TrEMBL top hitse value%identityAlignment
A0A0A0LXB2 Uncharacterized protein3.0e-1966.67Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MIS+LAQERLLG ALGSVFAGVV                       MRKPVLAKKYGPE SHLWNR VDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
A0A5D3BR76 Uncharacterized protein3.0e-1966.67Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MIS+LAQERLLG ALGS FAGVV                       MRKPVLAKKYGPE SHLWNR VDQTFGPMIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
A0A6J1DSC3 uncharacterized protein LOC1110234559.3e-2170.24Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPV+AKKYGPEVSHLWNR VDQTFGPMIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
A0A6J1HLZ5 uncharacterized protein LOC1114648262.3e-1967.86Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPVLAKKYGPE SHLWN  VDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
A0A6J1HZ79 uncharacterized protein LOC1114694462.3e-1967.86Show/hide
Query:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLGAALGSVFAGVV                       MRKPVLAKKYGPE SHLWN  VDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVV-----------------------MRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28430.1 unknown protein1.6e-0943.53Show/hide
Query:  MISILAQERLLGAALGSVFAGVVM---RK---------------------PVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW
        MISILAQERLLG  LGS   G ++   RK                      +  KKY  E + LWN+ VDQTF P I+ LSSR W
Subjt:  MISILAQERLLGAALGSVFAGVVM---RK---------------------PVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCCATTCTCGCTCAGGAGCGGCTTCTTGGTGCTGCATTGGGCAGCGTATTCGCCGGAGTTGTTATGAGAAAGCCTGTACTAGCAAAGAAATATGGCCCAGAGGT
TTCGCATCTATGGAATAGAGTTGTAGACCAGACATTCGGACCCATGATTCAGGCTCTCAGTTCACGGGGATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCCATTCTCGCTCAGGAGCGGCTTCTTGGTGCTGCATTGGGCAGCGTATTCGCCGGAGTTGTTATGAGAAAGCCTGTACTAGCAAAGAAATATGGCCCAGAGGT
TTCGCATCTATGGAATAGAGTTGTAGACCAGACATTCGGACCCATGATTCAGGCTCTCAGTTCACGGGGATGGTGA
Protein sequenceShow/hide protein sequence
MISILAQERLLGAALGSVFAGVVMRKPVLAKKYGPEVSHLWNRVVDQTFGPMIQALSSRGW