; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0015294 (gene) of Chayote v1 genome

Gene IDSed0015294
OrganismSechium edule (Chayote v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationLG11:30337091..30338138
RNA-Seq ExpressionSed0015294
SyntenySed0015294
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.7e-2537.85Show/hide
Query:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------
        S ++NP+  ++S P+      +LL NICNL+P+RLDSTNY+ WK QV+ ILKAH+L+GHID T P P         GT    N +YL W           
Subjt:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------

Query:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA
                                          AAS+++ DEE L+H LNGL A +  F TSIRTRS  I+L EL  LL  +E ++ K  S IE  PTA
Subjt:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA

Query:  MTSINGNENHSYLG
        M + +  ++H   G
Subjt:  MTSINGNENHSYLG

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.5e-2132.69Show/hide
Query:  PSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW----------------
        P SS+NP  +  ++  +LL NICNL+P+RLDSTNY+ WK QV+ ILKAH+L+GHID T P P         GT    N EYL W                
Subjt:  PSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW----------------

Query:  --------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSA
                                                                         AASV++ DEE L+H LNGLPA +  FRTSIRTRS 
Subjt:  --------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSA

Query:  PITLGELDVLLDADEKSIRKVQSVIEPQPTAMTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYS
         I+L EL  LL ++E  I K  S IE  PTAM + +  ++H   G             RG R      FH  G NP + ++  S N         G+ ++
Subjt:  PITLGELDVLLDADEKSIRKVQSVIEPQPTAMTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYS

Query:  GGTNSHGFGTQN
         G  S G G+ N
Subjt:  GGTNSHGFGTQN

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-2334.04Show/hide
Query:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------
        S ++NP+  ++S         +LL NICNL+P+RLDSTNYI WK QV+ ILKAH+ +GHID T P P         GT    N EYL W           
Subjt:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------

Query:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA
                                          AAS+++ DEE L+H LNGLP  +  FRTSIRTRS  I+L EL  LL ++E ++ K  S IE  PTA
Subjt:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA

Query:  MTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYSGGTNSHGFGTQNWASRPSNGTIYGHLNFQPN
        M + + +++HS  G             RG R      FH  G NP + ++  S N     G    SG  G  +++ FGTQ    +P+      H  F P 
Subjt:  MTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYSGGTNSHGFGTQNWASRPSNGTIYGHLNFQPN

Query:  GNI----PNNYGLI-SQPYYNQNQQFNQRSNY
         +     PN  G+I S P +  + +    S Y
Subjt:  GNI----PNNYGLI-SQPYYNQNQQFNQRSNY

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]6.5e-2030.94Show/hide
Query:  TKPSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP------------GTENSEYLLW--------------
        T  ++S +   N + +P +LL NICNLI  RLDS+NY+ WK Q++ ILKAH+L G+IDGT P P               N EY +W              
Subjt:  TKPSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP------------GTENSEYLLW--------------

Query:  ---------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRS
                                                                       +  + SV I DE+ L+++LNGLP EY  F+TSIRT+S
Subjt:  ---------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRS

Query:  APITLGELDVLLDADEKSIRKV--QSVIEPQPTAMTSINGNENHS----YLGGNTQGQGMTRGSYRGNRGGQRGGFHR
          ITL E+  +L  +E++I  V  Q+   P P AM + N   N S    Y   N  G+G  RG +  NRGG+   F R
Subjt:  APITLGELDVLLDADEKSIRKV--QSVIEPQPTAMTSINGNENHS----YLGGNTQGQGMTRGSYRGNRGGQRGGFHR

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.3e-2538.32Show/hide
Query:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------
        S ++NP+  ++S P+      +LL NICNL+P+RLDSTNY+ WK QV+ ILKAH+L+GHID T P P         GT    N EYL W           
Subjt:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------

Query:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA
                                          AAS+++ DEE L+H LNGL A +  F TSIRTRS  I+L EL  LL  +E ++ K  S IE  PTA
Subjt:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA

Query:  MTSINGNENHSYLG
        M + +  ++H   G
Subjt:  MTSINGNENHSYLG

TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein3.3e-2537.85Show/hide
Query:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------
        S ++NP+  ++S P+      +LL NICNL+P+RLDSTNY+ WK QV+ ILKAH+L+GHID T P P         GT    N +YL W           
Subjt:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------

Query:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA
                                          AAS+++ DEE L+H LNGL A +  F TSIRTRS  I+L EL  LL  +E ++ K  S IE  PTA
Subjt:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA

Query:  MTSINGNENHSYLG
        M + +  ++H   G
Subjt:  MTSINGNENHSYLG

A0A5A7UZE5 Putative mitochondrial protein2.2e-2132.69Show/hide
Query:  PSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW----------------
        P SS+NP  +  ++  +LL NICNL+P+RLDSTNY+ WK QV+ ILKAH+L+GHID T P P         GT    N EYL W                
Subjt:  PSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW----------------

Query:  --------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSA
                                                                         AASV++ DEE L+H LNGLPA +  FRTSIRTRS 
Subjt:  --------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSA

Query:  PITLGELDVLLDADEKSIRKVQSVIEPQPTAMTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYS
         I+L EL  LL ++E  I K  S IE  PTAM + +  ++H   G             RG R      FH  G NP + ++  S N         G+ ++
Subjt:  PITLGELDVLLDADEKSIRKVQSVIEPQPTAMTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYS

Query:  GGTNSHGFGTQN
         G  S G G+ N
Subjt:  GGTNSHGFGTQN

A0A5A7VGG0 Retrotransposon protein1.4e-2334.04Show/hide
Query:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------
        S ++NP+  ++S         +LL NICNL+P+RLDSTNYI WK QV+ ILKAH+ +GHID T P P         GT    N EYL W           
Subjt:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------

Query:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA
                                          AAS+++ DEE L+H LNGLP  +  FRTSIRTRS  I+L EL  LL ++E ++ K  S IE  PTA
Subjt:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA

Query:  MTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYSGGTNSHGFGTQNWASRPSNGTIYGHLNFQPN
        M + + +++HS  G             RG R      FH  G NP + ++  S N     G    SG  G  +++ FGTQ    +P+      H  F P 
Subjt:  MTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYSGGTNSHGFGTQNWASRPSNGTIYGHLNFQPN

Query:  GNI----PNNYGLI-SQPYYNQNQQFNQRSNY
         +     PN  G+I S P +  + +    S Y
Subjt:  GNI----PNNYGLI-SQPYYNQNQQFNQRSNY

A0A5D3BEU0 Putative mitochondrial protein1.1e-2538.32Show/hide
Query:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------
        S ++NP+  ++S P+      +LL NICNL+P+RLDSTNY+ WK QV+ ILKAH+L+GHID T P P         GT    N EYL W           
Subjt:  SSSANPLGNATSTPH------YLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP---------GTE---NSEYLLW-----------

Query:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA
                                          AAS+++ DEE L+H LNGL A +  F TSIRTRS  I+L EL  LL  +E ++ K  S IE  PTA
Subjt:  -------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRSAPITLGELDVLLDADEKSIRKVQSVIEPQPTA

Query:  MTSINGNENHSYLG
        M + +  ++H   G
Subjt:  MTSINGNENHSYLG

A0A5J5B4Y2 Retrotran_gag_3 domain-containing protein3.1e-2030.94Show/hide
Query:  TKPSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP------------GTENSEYLLW--------------
        T  ++S +   N + +P +LL NICNLI  RLDS+NY+ WK Q++ ILKAH+L G+IDGT P P               N EY +W              
Subjt:  TKPSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQP------------GTENSEYLLW--------------

Query:  ---------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRS
                                                                       +  + SV I DE+ L+++LNGLP EY  F+TSIRT+S
Subjt:  ---------------------------------------------------------------TYPAASVTINDEETLLHILNGLPAEYGPFRTSIRTRS

Query:  APITLGELDVLLDADEKSIRKV--QSVIEPQPTAMTSINGNENHS----YLGGNTQGQGMTRGSYRGNRGGQRGGFHR
          ITL E+  +L  +E++I  V  Q+   P P AM + N   N S    Y   N  G+G  RG +  NRGG+   F R
Subjt:  APITLGELDVLLDADEKSIRKV--QSVIEPQPTAMTSINGNENHS----YLGGNTQGQGMTRGSYRGNRGGQRGGFHR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAGCCTTCTTCATCAGCCAATCCCCTGGGCAATGCTACATCAACTCCCCATTATCTACTATTTAACATTTGCAACCTCATTCCAGTTCGTTTAGACTCTACGAA
CTACATCCAATGGAAAGTACAAGTAACTGACATTCTTAAAGCTCATGCTCTATATGGCCACATTGATGGAACAACTCCCCAACCTGGAACTGAAAATTCAGAGTACTTAT
TATGGACGTATCCTGCAGCTTCCGTCACAATCAATGATGAAGAGACTCTCTTACACATATTAAATGGATTACCTGCTGAGTATGGACCATTTCGAACTTCGATTCGAACT
CGAAGTGCGCCGATTACCTTAGGTGAGCTTGATGTTCTTCTAGATGCTGATGAGAAATCAATTAGAAAAGTACAATCAGTAATTGAACCTCAACCAACTGCGATGACATC
GATCAATGGTAACGAAAATCACTCTTACTTGGGCGGAAACACGCAAGGTCAAGGCATGACTCGTGGATCTTACAGAGGAAATCGTGGTGGTCAACGTGGAGGTTTTCATC
GAGGTGGATCTAACCCTAGATGGCAAAACACAGATGGATCAGGTAATTTAAACCAATGGAGTGGGCGTGGATCCGGGTCAGGATATTCGGGTGGAACAAACTCTCATGGA
TTTGGCACACAAAATTGGGCTTCTAGACCCTCAAATGGCACTATTTATGGGCATCTTAATTTCCAGCCCAATGGTAACATTCCTAATAACTATGGCCTTATTTCTCAACC
TTATTATAATCAAAACCAGCAGTTTAATCAACGTAGTAATTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAAGCCTTCTTCATCAGCCAATCCCCTGGGCAATGCTACATCAACTCCCCATTATCTACTATTTAACATTTGCAACCTCATTCCAGTTCGTTTAGACTCTACGAA
CTACATCCAATGGAAAGTACAAGTAACTGACATTCTTAAAGCTCATGCTCTATATGGCCACATTGATGGAACAACTCCCCAACCTGGAACTGAAAATTCAGAGTACTTAT
TATGGACGTATCCTGCAGCTTCCGTCACAATCAATGATGAAGAGACTCTCTTACACATATTAAATGGATTACCTGCTGAGTATGGACCATTTCGAACTTCGATTCGAACT
CGAAGTGCGCCGATTACCTTAGGTGAGCTTGATGTTCTTCTAGATGCTGATGAGAAATCAATTAGAAAAGTACAATCAGTAATTGAACCTCAACCAACTGCGATGACATC
GATCAATGGTAACGAAAATCACTCTTACTTGGGCGGAAACACGCAAGGTCAAGGCATGACTCGTGGATCTTACAGAGGAAATCGTGGTGGTCAACGTGGAGGTTTTCATC
GAGGTGGATCTAACCCTAGATGGCAAAACACAGATGGATCAGGTAATTTAAACCAATGGAGTGGGCGTGGATCCGGGTCAGGATATTCGGGTGGAACAAACTCTCATGGA
TTTGGCACACAAAATTGGGCTTCTAGACCCTCAAATGGCACTATTTATGGGCATCTTAATTTCCAGCCCAATGGTAACATTCCTAATAACTATGGCCTTATTTCTCAACC
TTATTATAATCAAAACCAGCAGTTTAATCAACGTAGTAATTATTGA
Protein sequenceShow/hide protein sequence
MTKPSSSANPLGNATSTPHYLLFNICNLIPVRLDSTNYIQWKVQVTDILKAHALYGHIDGTTPQPGTENSEYLLWTYPAASVTINDEETLLHILNGLPAEYGPFRTSIRT
RSAPITLGELDVLLDADEKSIRKVQSVIEPQPTAMTSINGNENHSYLGGNTQGQGMTRGSYRGNRGGQRGGFHRGGSNPRWQNTDGSGNLNQWSGRGSGSGYSGGTNSHG
FGTQNWASRPSNGTIYGHLNFQPNGNIPNNYGLISQPYYNQNQQFNQRSNY