CuGenDBv2

Gene ID	Sed0015329
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein L18/L5
Genome location	LG12:5785918..5787327
RNA-Seq Expression	Sed0015329
Synteny	Sed0015329
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6597446.1 hypothetical protein SDJN03_10626, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-65

73.63

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G++    SPLF  GKP+ VAYDVEL+DD+TW VS G A+A  WE REKGSSGFDN  FLE+ED+ PID CDS+FDDIDNMR+RGNLFY++DRGS E EEY
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        SFDF RKKKSI EKED QQ+K KVNDK +N LAS HVKLPEH+KNKYV+IER EN+DFEKKLRTPTFNQL + YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI

XP_022934433.1 uncharacterized protein LOC111441610 isoform X1 [Cucurbita moschata]

2.2e-64

73.08

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G++    SPLF   KP+ VAYDVEL+DD+ W VS G A+A  WE REKGSSGFDN  FLE+ED+ PID CDS+FDDIDNMR+RGNLFY++DRGS E EEY
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        SFDF RKKKSI EKED QQ+K KVNDK +N LAS HVKLPEHVKNKYV+IER EN+DFEKKLRTPTFNQL + YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI

XP_022973751.1 uncharacterized protein LOC111472322 [Cucurbita maxima]

1.8e-66

74.03

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G++    SPLF  GKP+ VAYDVEL+DD+TW VS   A+A  WE REKGSSGFDN  FLE+ED+ PID CDS+FDDIDNMR+RGNLFY++DRGS E EEY
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        SFDF RKKKSI EKED QQ+K KVNDK +N LAS HVKLPEHVKNKYV+IEREN+DFEKKLRTPTFNQL + YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI

XP_023540951.1 uncharacterized protein LOC111801183 [Cucurbita pepo subsp. pepo]

6.3e-64

72.53

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G++    SPLF  GKP+ VAYDVEL+DD+TW VS G A+A  WE REKGSSGFDN  FLE+ED+ PID CDS+FDDIDNMR+RGNLFY++DRGS E EE 
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        SFDF RKKKSI E+ED QQ+K KVNDK +N LAS HVKLPEH+KNKYV+IER EN+DFEKKLRTPTFNQL + YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI

XP_038896573.1 uncharacterized protein LOC120084825 [Benincasa hispida]

4.5e-62

71.84

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Query:  SPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEYSFDFRRK
        SPLF  GKP+ VAYDVELVD +TW VSCG A+A  WE RE+G +GF+N  FLE+E + PID CD DFD+IDNMR+RGNLFY++DRGS E EEYS DF RK
Subjt:  SPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEYSFDFRRK

Query:  KKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        KKS+ EKED Q+SK K+NDKLDN LA+ HVKLPEHVKNKYV++ERE+DD EKKLRTPTFNQL   YHEPFCL I
Subjt:  KKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSG6 Uncharacterized protein

4.6e-60

67.96

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G+ +  L+PLF   KP  VAYDVELVDD+TW VSCG A+A  WE REKG SGF+N   LE+E + P+D CDSDFDDIDNMR+RGNLFY++D+ S E EE 
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        S DF RKKKS+ EKED  + + KVNDKLD  LAS  VKLPEH+KNKYV++ERENDD EKKLRTPTFNQL S YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI

A0A1S3CAH6 uncharacterized protein LOC103498514

2.4e-61

67.96

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G+++  L+PLF   KP  VAYD+ELVDD+TW VSCG A+A  WE REKG SG +N   LE+E + P+D CDSDFDDIDNMR+RGNLFY++DRGS E +EY
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        S DF RKKKSI EKE+R++S+ KVNDKLD  L S  VKLPEH+KNKYV++ERENDD EKKLRTPTFNQL   YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI

A0A6J1C8X9 uncharacterized protein LOC111009286

2.0e-60

69.06

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G+ +  LSPLF   KP   AYDVELVDD+TW VSCG A A  WE REK  SG +N  FLE ED+ P+D CDSD DDIDNMR+RGNLFY++DRGS E EEY
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        SFDF RKKKSI  KED++QS+ ++NDK DN LAS +VKLPEHVKNKYV++ER+NDD EKKLRTPTFNQL   YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI

A0A6J1F7N1 uncharacterized protein LOC111441610 isoform X1

1.0e-64

73.08

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G++    SPLF   KP+ VAYDVEL+DD+ W VS G A+A  WE REKGSSGFDN  FLE+ED+ PID CDS+FDDIDNMR+RGNLFY++DRGS E EEY
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        SFDF RKKKSI EKED QQ+K KVNDK +N LAS HVKLPEHVKNKYV+IER EN+DFEKKLRTPTFNQL + YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIER-ENDDFEKKLRTPTFNQLPSSYHEPFCLKI

A0A6J1I8E0 uncharacterized protein LOC111472322

8.6e-67

74.03

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Query:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY
        G++    SPLF  GKP+ VAYDVEL+DD+TW VS   A+A  WE REKGSSGFDN  FLE+ED+ PID CDS+FDDIDNMR+RGNLFY++DRGS E EEY
Subjt:  GTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDN--FLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEY

Query:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI
        SFDF RKKKSI EKED QQ+K KVNDK +N LAS HVKLPEHVKNKYV+IEREN+DFEKKLRTPTFNQL + YHEPFCL I
Subjt:  SFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G22450.1 Ribosomal L18p/L5e family protein

1.6e-17

36.88

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Query:  VELVDDNTWVVSCGKAKAHRWERREKGSSGFDNFLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEYSFDFRRKKK-SITEKEDRQQSKRK
        +E VDD+ W VS   ++A R  + +   +     ++    + +D  D D D+IDNMR+RG+LF+++DRGS E EEY++DF RK +    +KE  Q+ + K
Subjt:  VELVDDNTWVVSCGKAKAHRWERREKGSSGFDNFLENEDYSPIDSCDSDFDDIDNMRVRGNLFYEIDRGSNELEEYSFDFRRKKK-SITEKEDRQQSKRK

Query:  VNDKLDNLLASRHVKLPEHVKNKYVVIERE--NDDFEKKLRTPTFNQLPSSYHEPFCLKI
        +  K DN    + V+     +N     E +  N+  +K+ RT TFNQL + +H PFCL I
Subjt:  VNDKLDNLLASRHVKLPEHVKNKYVVIERE--NDDFEKKLRTPTFNQLPSSYHEPFCLKI

Sequences

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CDS sequence

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ATGTTAAGTAATCAGGAAGTTGTCTTACTCAAAATTCAACTTCATGATCTTCATCCTGCCTATGCTAAAACTGGACTTCCAGCTTTCCAACATTGTGAGCAGGGAGGAAA
GAAGTTTGTGGGGACTGCAAAGGCTTATCTATCTCCATTGTTCCTTTATGGTAAACCTTATTTAGTTGCCTATGATGTTGAACTTGTAGATGATAATACTTGGGTAGTTT
CATGTGGTAAAGCTAAAGCACACAGATGGGAAAGGAGAGAGAAGGGCTCGTCTGGCTTTGATAATTTCTTAGAGAATGAGGATTATTCCCCAATTGATTCCTGTGATTCA
GATTTTGATGATATTGACAACATGAGAGTACGTGGAAATCTCTTCTATGAAATTGATCGAGGTTCCAATGAGCTTGAAGAATATAGCTTCGATTTTCGTCGGAAGAAAAA
ATCTATAACGGAAAAGGAAGATAGGCAGCAAAGTAAACGCAAAGTCAACGATAAACTTGATAATCTTTTGGCAAGTCGCCATGTAAAACTTCCTGAACATGTGAAAAACA
AATATGTAGTAATTGAAAGGGAGAATGATGACTTTGAGAAAAAGCTTAGGACACCCACGTTTAATCAGCTTCCTAGTTCTTACCATGAGCCATTTTGTCTGAAGATAAAG
CAGCAAAGGAGACCCAGAAAAGGTGGAAGTCCACACCTTTAA

mRNA sequence

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Protein sequence

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MLSNQEVVLLKIQLHDLHPAYAKTGLPAFQHCEQGGKKFVGTAKAYLSPLFLYGKPYLVAYDVELVDDNTWVVSCGKAKAHRWERREKGSSGFDNFLENEDYSPIDSCDS
DFDDIDNMRVRGNLFYEIDRGSNELEEYSFDFRRKKKSITEKEDRQQSKRKVNDKLDNLLASRHVKLPEHVKNKYVVIERENDDFEKKLRTPTFNQLPSSYHEPFCLKIK
QQRRPRKGGSPHL

Sed0015329 (gene) of Chayote v1 genome