CuGenDBv2

Gene ID	Sed0015347
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	LG13:20433094..20435074
RNA-Seq Expression	Sed0015347
Synteny	Sed0015347
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR009088 - Transcription factor IIA, beta-barrel IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-50

98.11

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

KAG7031763.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-50

97.17

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_022133819.1 transcription initiation factor IIA subunit 2 [Momordica charantia]

1.4e-50

98.11

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]

1.1e-50

98.11

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]

8.1e-51

99.06

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDS ESVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BWA2 Transcription initiation factor IIA subunit 2

6.7e-51

98.11

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1F935 Transcription initiation factor IIA subunit 2

1.5e-50

97.17

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1FTM1 Transcription initiation factor IIA subunit 2

5.1e-51

98.11

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1ILT9 Transcription initiation factor IIA subunit 2

1.5e-50

97.17

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 2

5.1e-51

98.11

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

3.0e-48

87.74

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

O74948 Transcription initiation factor IIA subunit 2

1.9e-26

52.53

Show/hide

Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL TYRFCD VWTFI+++ +F+ ++   +  +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 2

3.0e-48

87.74

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 2

3.5e-49

89.62

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D QE+V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Q54ND1 Transcription initiation factor IIA subunit 2

2.7e-25

55.45

Show/hide

Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQ-ESVGRIKIVACDSK
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG LHTYRFCD+VWTFIL++A FK E ++   V R+KIVACD+ 
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQ-ESVGRIKIVACDSK

Query:  L
        +
Subjt:  L

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

2.5e-50

89.62

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D QE+V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

2.5e-50

89.62

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D QE+V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTCAGCCCTGAGCTTGCTATTCAGGT
TCTTGTTCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCGCAGGTGAAAAGCAAGGTGACTATCAAGGGACATTTGCACACGTATCGGTTCTGCGACAACGTATGGA
CGTTCATTTTGCAGGATGCAACGTTTAAGAACGAGGATTCTCAAGAGAGTGTCGGAAGAATCAAAATAGTAGCATGCGACTCGAAGTTGCTCTCACAATAA

mRNA sequence

Show/hide mRNA sequence

AAAAGCCCCAAATTTCTTCGCTCGCGAAAATCTTTGGAGCTAACGTTAACCACAGCTAGAATCAAGAACAGCCAGAAGCATCACAAAATTCTCCAACAAAATCTGTAGCT
ACAATTCTTTGCTTATCTTGTTTTTCGAAGAAGAATGGCAACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGA
ACGGTACTCTCAGCCCTGAGCTTGCTATTCAGGTTCTTGTTCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCGCAGGTGAAAAGCAAGGTGACTATCAAGGGACAT
TTGCACACGTATCGGTTCTGCGACAACGTATGGACGTTCATTTTGCAGGATGCAACGTTTAAGAACGAGGATTCTCAAGAGAGTGTCGGAAGAATCAAAATAGTAGCATG
CGACTCGAAGTTGCTCTCACAATAAGCTTTTTCAAACATCCGATTATTAGATGAAATTTGCATAATTATCTGCTGATGATCTGAGAGGAATAGAGCCAAGCCATCAAGGC
TGTGTAGGAATTGCAGGTTTGGAAATGATTCAAATGTTAATTCTGTAAAGTTTGAACAGCAGAAAGTTACTTTCCACGCACGTTGACGTTACATTTGACTGTAATTGGCT
TCTAAAGCTGATTTCATAACAATTATAATATGACCCATCTTGTTTAATAATAATAAAACTTTGAGGTGTCTGTTTTTAA

Protein sequence

Show/hide protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQESVGRIKIVACDSKLLSQ

Sed0015347 (gene) of Chayote v1 genome