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Sed0015365 (gene) of Chayote v1 genome

Gene IDSed0015365
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor IBH1
Genome locationLG03:45936435..45937024
RNA-Seq ExpressionSed0015365
SyntenySed0015365
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048635.1 transcription factor IBH1 [Cucumis melo var. makuwa]4.8e-4262.35Show/hide
Query:  LKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGRRVGR
        LKQ FLK WLV LQS  SS TNM+FL+RKKAIK +AD AMAATRNG T+WS +I+ KS+KGHA     EAILN+R          +    L+K GR++GR
Subjt:  LKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGRRVGR

Query:  KVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY
        K+  RS LP S++   ++AKRLV K+TKVLRSL+PGGEFM+DE LLIEEALDYI FL+AQVDGMR +ANY
Subjt:  KVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY

XP_004149100.1 transcription factor IBH1-like 1 [Cucumis sativus]5.3e-4160.71Show/hide
Query:  LKQLFLKKWLVVLQSI--SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHA-GRALREA------ILNQRKMARMLQKRGRRVGRKV
        LKQ FLKKWLV L+S   SS TNM+FL+RKKAIK +AD AMA TR G T+WS +I+ KS+KGHA  +A+         +L +++    LQK GR++GR++
Subjt:  LKQLFLKKWLVVLQSI--SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHA-GRALREA------ILNQRKMARMLQKRGRRVGRKV

Query:  T-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY
          RS LP S+   +++AKRLV K+TKVLRSL+PGGEFMEDEVLLIEEALDYI FL+AQVDGMR +ANY
Subjt:  T-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY

XP_008452339.1 PREDICTED: uncharacterized protein LOC103493395 [Cucumis melo]1.4e-4162.07Show/hide
Query:  LNKMLKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGR
        LNK LKQ FLK WLV LQS  SS TNM+FL+RKKAIK +AD AMAATRNG T+WS +I+ K +KGHA     EAILN+R          +    L+K GR
Subjt:  LNKMLKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGR

Query:  RVGRKVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY
        ++GRK+  RS LP S++   ++AKRLV K+TKVLRSL+PGGEFM+DE LLIEEALDYI FL+AQVDGMR +ANY
Subjt:  RVGRKVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY

XP_023537774.1 transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]7.1e-3861.25Show/hide
Query:  LKQLFLKKWLVVLQSIS-SNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLPQS
        LKQ+F+KKW++ L  I+ SNTNM+FLERK AIK  +D AMA TRNGAT WS AI+ KSI+      LR           ML+K GR+V R+ T ++  +S
Subjt:  LKQLFLKKWLVVLQSIS-SNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLPQS

Query:  RSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANYK
        RS A+SVAKRLVHK+TK+LRSLVPGGEFM+DE LLI+EALDYI+FLR QVDGMR +AN K
Subjt:  RSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANYK

XP_038890559.1 transcription factor IBH1-like 1 [Benincasa hispida]7.9e-4568.67Show/hide
Query:  LKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHA------GRALREAILNQRKM-ARMLQKRGRRVGRKVT
        LKQ FLKKWLV L+S  SSNTNM+ LERKKAIK +AD AMAATRNG+T+WS AI+ KSIKG A       R    A L ++KM    L K GRRVGRKV 
Subjt:  LKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHA------GRALREAILNQRKM-ARMLQKRGRRVGRKVT

Query:  RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY
        RS  P  ++ A++VAKRLV K+TKVLRSLVPGGEFMEDEVLLIEEALDYITFL+AQVDGMR +ANY
Subjt:  RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY

TrEMBL top hitse value%identityAlignment
A0A0A0LM92 Uncharacterized protein2.6e-4160.71Show/hide
Query:  LKQLFLKKWLVVLQSI--SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHA-GRALREA------ILNQRKMARMLQKRGRRVGRKV
        LKQ FLKKWLV L+S   SS TNM+FL+RKKAIK +AD AMA TR G T+WS +I+ KS+KGHA  +A+         +L +++    LQK GR++GR++
Subjt:  LKQLFLKKWLVVLQSI--SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHA-GRALREA------ILNQRKMARMLQKRGRRVGRKV

Query:  T-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY
          RS LP S+   +++AKRLV K+TKVLRSL+PGGEFMEDEVLLIEEALDYI FL+AQVDGMR +ANY
Subjt:  T-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY

A0A1S3BT01 uncharacterized protein LOC1034933956.7e-4262.07Show/hide
Query:  LNKMLKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGR
        LNK LKQ FLK WLV LQS  SS TNM+FL+RKKAIK +AD AMAATRNG T+WS +I+ K +KGHA     EAILN+R          +    L+K GR
Subjt:  LNKMLKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGR

Query:  RVGRKVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY
        ++GRK+  RS LP S++   ++AKRLV K+TKVLRSL+PGGEFM+DE LLIEEALDYI FL+AQVDGMR +ANY
Subjt:  RVGRKVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY

A0A5D3CK75 Transcription factor IBH12.3e-4262.35Show/hide
Query:  LKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGRRVGR
        LKQ FLK WLV LQS  SS TNM+FL+RKKAIK +AD AMAATRNG T+WS +I+ KS+KGHA     EAILN+R          +    L+K GR++GR
Subjt:  LKQLFLKKWLVVLQS-ISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----------KMARMLQKRGRRVGR

Query:  KVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY
        K+  RS LP S++   ++AKRLV K+TKVLRSL+PGGEFM+DE LLIEEALDYI FL+AQVDGMR +ANY
Subjt:  KVT-RSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANY

A0A6J1FC37 transcription factor IBH1-like 15.9e-3861.25Show/hide
Query:  LKQLFLKKWLVVLQSIS-SNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLPQS
        LKQ+F+KKW++ L  I+ SNTNM+FLERK AIK  +D AMAATRNGAT WS AI+ KSI+      LR           ML+K  R+V R  +R++L +S
Subjt:  LKQLFLKKWLVVLQSIS-SNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLPQS

Query:  RSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANYK
        RS A+SVAKRLVHK+TK+LRSLVPGGEFM+DE LLI+EALDYI+FLR QVDGMR +A+ K
Subjt:  RSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANYK

A0A6J1HLT3 transcription factor IBH1-like 11.3e-3763.12Show/hide
Query:  LKQLFLKKWLVVLQSIS-SNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLPQS
        LK++FLKKW++ L  I+ SNT M+FLERKKAIK ++D AMAATRNGAT WS AI+ KSI+      LR      RK    L K GR++ R+ T S+  +S
Subjt:  LKQLFLKKWLVVLQSIS-SNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLPQS

Query:  RSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANYK
        RS A+SVAKRLV K+TKVLRSLVPGGEFMEDE LLI+EALDYI+FLR QVDGMR +AN K
Subjt:  RSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANYK

SwissProt top hitse value%identityAlignment
Q9C8Z9 Transcription factor bHLH1481.4e-0433.55Show/hide
Query:  SISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALRE----AILNQRKMARMLQKRGRRVGRKVTRSNLPQSRSFAKSVAKRL
        S S++++    +R KA++  AD+A+A +  G TLWS AIL   IK    +  R     AI     +      R R+    V R N        KS+    
Subjt:  SISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALRE----AILNQRKMARMLQKRGRRVGRKVTRSNLPQSRSFAKSVAKRL

Query:  VHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGM----RLIANY
        V++K +VL  LVPG       V+L EEA DYI  L  QV  M    +L+++Y
Subjt:  VHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGM----RLIANY

Q9LSN7 Transcription factor bHLH1471.4e-0430Show/hide
Query:  LVVLQSISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----KMARMLQKRGRRVGRKVTRSNLPQSRSFAKS
        L + Q  SS+++       +A++  AD+A+A    G TLWS AIL+K++K    +  R+ I N          +  K+ R    ++    LP        
Subjt:  LVVLQSISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----KMARMLQKRGRRVGRKVTRSNLPQSRSFAKS

Query:  VAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLI
             V +K KVL  LVPG       V+L EE  DYI  +  Q+  M  I
Subjt:  VAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLI

Q9M0B9 Transcription factor IBH1-like 14.2e-1737.35Show/hide
Query:  LKQLFLKKWLVVLQSI-SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKS-------IKGHAGRALREAILNQRKMAR-MLQKRGRRVGRKV
        + + FLKKW + LQ    S  N    ERKKAIK +AD AMA+ R G T WS A++ K+       ++        E ++N++   + +  ++  R  +K+
Subjt:  LKQLFLKKWLVVLQSI-SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKS-------IKGHAGRALREAILNQRKMAR-MLQKRGRRVGRKV

Query:  TRSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIAN
         R     +   A + AKRLV ++T+ LR++VPGGE M ++VLL++E LDYI  L+ QV+ MR I +
Subjt:  TRSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIAN

Arabidopsis top hitse value%identityAlignment
AT3G06590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.0e-0533.55Show/hide
Query:  SISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALRE----AILNQRKMARMLQKRGRRVGRKVTRSNLPQSRSFAKSVAKRL
        S S++++    +R KA++  AD+A+A +  G TLWS AIL   IK    +  R     AI     +      R R+    V R N        KS+    
Subjt:  SISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALRE----AILNQRKMARMLQKRGRRVGRKVTRSNLPQSRSFAKSVAKRL

Query:  VHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGM----RLIANY
        V++K +VL  LVPG       V+L EEA DYI  L  QV  M    +L+++Y
Subjt:  VHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGM----RLIANY

AT3G17100.1 sequence-specific DNA binding transcription factors1.0e-0530Show/hide
Query:  LVVLQSISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----KMARMLQKRGRRVGRKVTRSNLPQSRSFAKS
        L + Q  SS+++       +A++  AD+A+A    G TLWS AIL+K++K    +  R+ I N          +  K+ R    ++    LP        
Subjt:  LVVLQSISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQR----KMARMLQKRGRRVGRKVTRSNLPQSRSFAKS

Query:  VAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLI
             V +K KVL  LVPG       V+L EE  DYI  +  Q+  M  I
Subjt:  VAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLI

AT4G30410.1 sequence-specific DNA binding transcription factors3.0e-1837.35Show/hide
Query:  LKQLFLKKWLVVLQSI-SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKS-------IKGHAGRALREAILNQRKMAR-MLQKRGRRVGRKV
        + + FLKKW + LQ    S  N    ERKKAIK +AD AMA+ R G T WS A++ K+       ++        E ++N++   + +  ++  R  +K+
Subjt:  LKQLFLKKWLVVLQSI-SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKS-------IKGHAGRALREAILNQRKMAR-MLQKRGRRVGRKV

Query:  TRSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIAN
         R     +   A + AKRLV ++T+ LR++VPGGE M ++VLL++E LDYI  L+ QV+ MR I +
Subjt:  TRSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIAN

AT4G30410.2 sequence-specific DNA binding transcription factors3.0e-1837.35Show/hide
Query:  LKQLFLKKWLVVLQSI-SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKS-------IKGHAGRALREAILNQRKMAR-MLQKRGRRVGRKV
        + + FLKKW + LQ    S  N    ERKKAIK +AD AMA+ R G T WS A++ K+       ++        E ++N++   + +  ++  R  +K+
Subjt:  LKQLFLKKWLVVLQSI-SSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKS-------IKGHAGRALREAILNQRKMAR-MLQKRGRRVGRKV

Query:  TRSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIAN
         R     +   A + AKRLV ++T+ LR++VPGGE M ++VLL++E LDYI  L+ QV+ MR I +
Subjt:  TRSNLPQSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIAN

AT5G57780.1 EXPRESSED IN: 18 plant structures2.2e-2142.14Show/hide
Query:  MLKQLFLKKWLVVLQSISSNTN--MDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLP
        M+KQ F+KKW+  L  + S+    ++  ERK AI+ ++D AMAA RNG+T+WS A++++S    A           + MAR + K+ R   R   R N+ 
Subjt:  MLKQLFLKKWLVVLQSISSNTN--MDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLP

Query:  QSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIA
          R      AK  V K+T +L+SLVPGGE ++D+  LI E LDYI +LRAQVD MR +A
Subjt:  QSRSFAKSVAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAACAAAATGCTCAAACAATTATTTCTCAAGAAATGGCTTGTTGTTCTACAATCCATCTCCTCAAACACAAATATGGACTTCTTAGAGAGAAAAAAGGCCATAAA
AACGACAGCGGATAAAGCTATGGCTGCAACGAGAAACGGCGCGACTCTTTGGAGTCTAGCCATCCTCACCAAATCCATAAAAGGCCATGCGGGTCGAGCTCTACGTGAGG
CCATCTTGAATCAAAGGAAGATGGCTAGGATGCTGCAAAAGAGGGGTCGTAGAGTCGGTCGAAAAGTGACGAGGAGTAACTTGCCTCAGTCGAGATCCTTTGCAAAATCA
GTTGCTAAGAGATTGGTTCACAAAAAGACCAAAGTTCTTAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGTTTTGTTGATTGAAGAAGCCTTAGATTACAT
AACGTTTCTTCGAGCTCAGGTTGATGGAATGCGATTAATTGCTAATTACAAATGA
mRNA sequenceShow/hide mRNA sequence
TTTTCTTTCTTCTTTTCTTTCATATGCAACCCTAGCACACTTTTCTAAACCCTAAATATCTTTTCAAAATCAAATCTTCCCTTAACTATCTTTCTATGCTCAACAAAATG
CTCAAACAATTATTTCTCAAGAAATGGCTTGTTGTTCTACAATCCATCTCCTCAAACACAAATATGGACTTCTTAGAGAGAAAAAAGGCCATAAAAACGACAGCGGATAA
AGCTATGGCTGCAACGAGAAACGGCGCGACTCTTTGGAGTCTAGCCATCCTCACCAAATCCATAAAAGGCCATGCGGGTCGAGCTCTACGTGAGGCCATCTTGAATCAAA
GGAAGATGGCTAGGATGCTGCAAAAGAGGGGTCGTAGAGTCGGTCGAAAAGTGACGAGGAGTAACTTGCCTCAGTCGAGATCCTTTGCAAAATCAGTTGCTAAGAGATTG
GTTCACAAAAAGACCAAAGTTCTTAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGTTTTGTTGATTGAAGAAGCCTTAGATTACATAACGTTTCTTCGAGC
TCAGGTTGATGGAATGCGATTAATTGCTAATTACAAATGA
Protein sequenceShow/hide protein sequence
MLNKMLKQLFLKKWLVVLQSISSNTNMDFLERKKAIKTTADKAMAATRNGATLWSLAILTKSIKGHAGRALREAILNQRKMARMLQKRGRRVGRKVTRSNLPQSRSFAKS
VAKRLVHKKTKVLRSLVPGGEFMEDEVLLIEEALDYITFLRAQVDGMRLIANYK