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Sed0015376 (gene) of Chayote v1 genome

Gene IDSed0015376
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG05:32015085..32015594
RNA-Seq ExpressionSed0015376
SyntenySed0015376
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]1.7e-1838.85Show/hide
Query:  TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLG
        T W PP     K+N + A         +GA++ ND G VMAA    I     VE+ E LA R  + +A ELGF  + VE D+EIV+K L+ N    S +G
Subjt:  TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLG

Query:  AVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY
         ++ D++ LA++L    F+   R+ N VAHGLAR A  +  F+ W+ED+P A    Y
Subjt:  AVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY

XP_023888977.1 uncharacterized protein LOC112001046 [Quercus suber]2.2e-1839.58Show/hide
Query:  PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN
        P+  +V++  W PP    YKVN + A+    +K R+G VV ND G+VM ++A+ I     VEV EA+  R  + +  ELG R    E D+E+VVK L  +
Subjt:  PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN

Query:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRA
          DRS +G ++ D + L +  + C FS   R+ N VAH L RRA
Subjt:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRA

XP_023910597.1 uncharacterized protein LOC112022257 [Quercus suber]1.3e-1837.01Show/hide
Query:  IVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDR
        + R+  W PP    YKVN + A+    +K  +G VV N+ G+VM ++A+ I     VEV +ALA R  + +  ELG R    E D+E+VVK L  +  D+
Subjt:  IVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDR

Query:  SDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP
        S +G ++ D + L +  + C FS   R+ N V H L RRA +Y     W+E +P
Subjt:  SDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP

XP_023927486.1 uncharacterized protein LOC112038880 [Quercus suber]6.5e-1836.42Show/hide
Query:  RSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSD
        R+  W+PPT    KVN + A         +G ++ N++G VMAA+++ I     VE+ E LA R  + +A ELGF ++E+E D+E V K +  + +DRS 
Subjt:  RSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSD

Query:  LGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD
        +G VL DI+ L ++          R  N VAH LARRA+    F  W+E +P+  +  Y+ D
Subjt:  LGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD

XP_030934661.1 uncharacterized protein LOC115960098 [Quercus lobata]9.0e-2037.58Show/hide
Query:  TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLG
        T W PP     KVN + A         +GA++ ND G VMAA  + I     VE+ E LA R  + +A +LGF ++ VE D+EI++K L++N +  S  G
Subjt:  TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLG

Query:  AVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY
         +L DI+ ++++L   +F+   R+ N VAHGLAR A  + +F+ W+ED+P      Y
Subjt:  AVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY

TrEMBL top hitse value%identityAlignment
A0A2N9EMZ0 Reverse transcriptase domain-containing protein4.5e-1736.71Show/hide
Query:  PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN
        PK    +STTWKPP    YKVN + A      +  +G ++ N RGEVM +++  I     VE  EA A    IQ+A +LGF  +++E D++I+V+ L   
Subjt:  PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN

Query:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP
            +  G V+ DI++ A NL+   F   +R  N++AH LA+RA   + F  W+E +P
Subjt:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP

A0A2N9FT78 RNase H domain-containing protein1.6e-1735.76Show/hide
Query:  STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDL
        ST+W+PP    YKVN + A     K   +G VV +  G V+A +++ +      E+ EA A R  IQ+AME+G   ++ E D+E ++++L+N  +  +  
Subjt:  STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDL

Query:  GAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP
        G ++ D + L  + +  +F+   R  NSVAH LARRAL+  +F  W+ED P
Subjt:  GAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP

A0A2N9FY90 RNase H domain-containing protein3.5e-1733.33Show/hide
Query:  NEIVRSTT--WKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN
        N ++  T   W PP     KVN + A      K  +G ++ N+ G  M A+++ I       V EALA+R  +  A+E+GF+ + +E D+E+VV++ +  
Subjt:  NEIVRSTT--WKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN

Query:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD
            S  G ++ D+Q+LA  ++ C+FS   R+AN VAH LARRA    D+  W+E +P   ++  + D
Subjt:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD

A0A2N9GBQ2 RNase H domain-containing protein4.5e-1735.76Show/hide
Query:  STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDL
        ST W+PP    YKVN + A     K   +G VV +  G V+A +++ +      E+ EA A R  IQ+AME+G   ++ E D+E ++++L+N  +  +  
Subjt:  STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDL

Query:  GAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP
        G ++ D + L  +    +F+   R  NSVAH LARRAL+  +F  W+ED P
Subjt:  GAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP

A0A2N9HYE3 Reverse transcriptase domain-containing protein4.5e-1736.71Show/hide
Query:  PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN
        PK    +STTWKPP    YKVN + A      +  +G ++ N RGEVM +++  I     VE  EA A    IQ+A +LGF  +++E D++I+V+ L   
Subjt:  PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANN

Query:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP
            +  G V+ DI++ A NL+   F   +R  N++AH LA+RA   + F  W+E +P
Subjt:  VIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein5.5e-0724.5Show/hide
Query:  KNEIVRST--TWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLAN
        K ++ RS+   W+PP     K N++  +N   ++  +G V+ N++GEV    A+ + ++  V   E  A+R  +       +  +  E+D++++++ L N
Subjt:  KNEIVRST--TWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLAN

Query:  NVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDF
        + I  S L   + D+Q L +      F +  R  N++A  +AR +L + ++
Subjt:  NVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGAT
GGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGA
TACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCG
GTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGA
GTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGAT
GGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGA
TACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCG
GTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGA
GTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA
Protein sequenceShow/hide protein sequence
MPKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGA
VLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD