CuGenDBv2

Gene ID	Sed0015395
Organism	Sechium edule (Chayote v1)
Description	U3 small nucleolar ribonucleoprotein protein IMP4
Genome location	LG11:31164762..31169327
RNA-Seq Expression	Sed0015395
Synteny	Sed0015395
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0016363 - nuclear matrix (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0034457 - Mpp10 complex (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0030515 - snoRNA binding (molecular function) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579112.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-155

94.54

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELEDD TAVPRTHIDDEYANAS+IDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTAN+LKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEK GGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

KAG7016636.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-155

94.54

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELEDD TAVPRTHIDDEYANAS+IDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTAN+LKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEK GGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

XP_022157893.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Momordica charantia]

1.2e-155

94.2

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEE ALRKEIELEDD TAVPRTHIDDEYAN SE+DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE+RG P GLI+SHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTANILKHLFPVPKPDTKRV+TFANQSDY+SFRHHIYEKQGG KSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

XP_022939256.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucurbita moschata]

2.6e-155

94.54

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELEDD TAVPRTHIDDEYANAS+IDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTAN+LKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEK GGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

XP_022993779.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucurbita maxima]

6.8e-156

94.88

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELEDD TAVPRTHIDDEYANAS+IDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTAN+LKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEKQGGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPI1 U3 small nucleolar ribonucleoprotein protein IMP4

4.0e-154

94.18

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELED+ TAVPRTHIDDEYANASE+DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEI+DKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLG
        RTANILKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEK GGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLG

A0A5D3BJ53 U3 small nucleolar ribonucleoprotein IMP4

4.0e-154

94.18

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELED+ TAVPRTHIDDEYANASE+DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEI+DKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLG
        RTANILKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEK GGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLG

A0A6J1DUL2 U3 small nucleolar ribonucleoprotein protein IMP4

5.6e-156

94.2

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEE ALRKEIELEDD TAVPRTHIDDEYAN SE+DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE+RG P GLI+SHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTANILKHLFPVPKPDTKRV+TFANQSDY+SFRHHIYEKQGG KSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

A0A6J1FFE4 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-155

94.54

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELEDD TAVPRTHIDDEYANAS+IDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTAN+LKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEK GGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

A0A6J1K117 U3 small nucleolar ribonucleoprotein protein IMP4

3.3e-156

94.88

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELEDD TAVPRTHIDDEYANAS+IDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RHEIKDKKA+GTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        RTAN+LKHLFPVPKPDTKRVVTFANQSDY+SFRHHIYEKQGGAKSI LKEIGPRFE+RLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

SwissProt top hits

e value

%identity

Alignment

Q0VD01 U3 small nucleolar ribonucleoprotein protein IMP4

8.2e-88

56.16

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  ER   E+K K+R ALEE + IPTELR E  AL+  +E +D        H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE+RG PVGLI+SHLPFGPTAYF L NVV RH+I D   LGT  EA PH+I++ F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL
        R ++IL++LFPVPK D++RV+TFANQ DY+SFRHH+Y+K    +++ L E+GPRFE++LY I+LGT++Q   A  EW   PY  T  KR FL
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL

Q5PQR5 U3 small nucleolar ribonucleoprotein protein IMP4

1.1e-87

55.82

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R + EKK +++ ALEE + IPTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE+RG PVGLI+SHLPFGPTAYF L NVV RH+I D   LGTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL
        R ++IL++LFPVPK D+ RV+TFANQ DY+SFRHH+Y+K    +++ L E+GPRFE++LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL

Q5R947 U3 small nucleolar ribonucleoprotein protein IMP4

1.8e-87

55.82

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R   E+K ++R ALEE + IPTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE+RG PVGLI+SHLPFGPTAYF L NVV RH+I D   LGTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL
        R ++IL++LFPVPK D+ RV+TFANQ DY+SFRHH+Y+K    +++ L E+GPRFE++LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL

Q8VHZ7 U3 small nucleolar ribonucleoprotein protein IMP4

1.1e-87

55.82

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R + EKK +++ ALEE + IPTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE+RG PVGLI+SHLPFGPTAYF L NVV RH+I D   LGTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL
        R ++IL++LFPVPK D+ RV+TFANQ DY+SFRHH+Y+K    +++ L E+GPRFE++LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL

Q96G21 U3 small nucleolar ribonucleoprotein protein IMP4

1.8e-87

55.82

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R   E+K ++R ALEE + IPTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE+RG PVGLI+SHLPFGPTAYF L NVV RH+I D   LGTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL
        R ++IL++LFPVPK D+ RV+TFANQ DY+SFRHH+Y+K    +++ L E+GPRFE++LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRQFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

2.9e-128

73.81

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF
        M RR +RL++EY+YRKSLEG ER +YE+KR IREAL+EGKPIPTELRN E  LR+EI+LED  TAVPR+HIDDEYANA+E DPKIL+TTSR+PSAPL +F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE
         KELK VFPN+QR+NRG QVISEIIET R+H+FTDVILVHE+RG P GLIISHLPFGPTAYFGL NVV RH+I DKK++G MPE YPH+I NNFTT++G+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEK-QGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD
        R  NILKH+FP PK D KR+VTF+NQSDY+SFR+H+Y+K +GG KSI LKEIGPRFE+RLYQ+KLGTV+Q EA+ EWVIRPYM T+KKR+F+G+
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYVSFRHHIYEK-QGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

AT4G01560.1 Ribosomal RNA processing Brix domain protein

1.8e-37

35.5

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Query:  RREYLYRKSLEGKERLLYEKKRKIR-------EALEEG-----KPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAP
        +R  +Y K    K+    EK++KIR        ALE G     K IP  + N   +       +D++        +       EI PK+L+TT R  S  
Subjt:  RREYLYRKSLEGKERLLYEKKRKIR-------EALEEG-----KPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAP

Query:  LTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTT
              EL  V PN+    RG   + +I+E     +FT +I+VH NR +P  L+I  LP GPTA+F L N+V R +IK+    G      P ++LNNFTT
Subjt:  LTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTT

Query:  KLGERTANILKHLFPVPKPD--TKRVVTFANQSDYVSFRHH--IYEKQGGAKSIG--------LKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKT
        +LG R     + LFP P P+   +RVVTF NQ D++ FRHH  I+E +      G        L+E GPRF ++L  ++ GT D    + EWV +P M T
Subjt:  KLGERTANILKHLFPVPKPD--TKRVVTFANQSDYVSFRHH--IYEKQGGAKSIG--------LKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKT

Query:  TKKRQFL
        +++R FL
Subjt:  TKKRQFL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTGCGAAGAAACATTCGACTAAGGAGAGAGTATCTGTACCGAAAGAGTTTAGAAGGCAAGGAGCGTTTGCTATATGAGAAGAAGCGAAAGATTAGAGAAGCCCTCGA
AGAGGGGAAACCTATTCCTACTGAACTCCGTAACGAGGAGGGAGCACTTCGTAAAGAAATTGAACTCGAGGATGACCAAACGGCAGTTCCAAGGACACATATTGATGATG
AGTATGCGAATGCTTCAGAAATTGATCCTAAAATTTTGATAACTACATCTCGTGATCCAAGTGCACCTTTAACACAATTTGCAAAGGAATTAAAAATCGTCTTTCCCAAT
GCACAAAGAATGAATCGTGGTGGTCAGGTGATCTCAGAGATTATAGAGACGTGCCGAGCTCACGAATTTACAGATGTTATTTTAGTTCATGAAAATCGAGGTAAGCCAGT
TGGTTTGATTATCAGCCATCTTCCTTTTGGTCCAACTGCATATTTTGGATTGTACAATGTGGTTCCCAGACATGAAATTAAGGACAAAAAAGCTTTGGGGACGATGCCTG
AGGCCTATCCGCATATAATATTGAACAATTTTACCACAAAGTTGGGTGAAAGGACGGCCAACATCTTAAAGCATCTATTCCCCGTACCGAAGCCAGACACCAAACGTGTG
GTTACTTTTGCTAATCAGTCTGATTATGTTTCATTCAGGCATCATATTTATGAGAAGCAGGGAGGTGCCAAATCAATTGGGCTGAAGGAGATTGGTCCTCGGTTTGAAAT
GCGACTGTATCAGATCAAGTTGGGAACCGTTGATCAAACGGAAGCTCAGAACGAATGGGTGATTAGACCATACATGAAAACAACCAAGAAACGCCAGTTCCTTGGTGATT
GA

mRNA sequence

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Protein sequence

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MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEGALRKEIELEDDQTAVPRTHIDDEYANASEIDPKILITTSRDPSAPLTQFAKELKIVFPN
AQRMNRGGQVISEIIETCRAHEFTDVILVHENRGKPVGLIISHLPFGPTAYFGLYNVVPRHEIKDKKALGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV
VTFANQSDYVSFRHHIYEKQGGAKSIGLKEIGPRFEMRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRQFLGD

Sed0015395 (gene) of Chayote v1 genome