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Sed0015405 (gene) of Chayote v1 genome

Gene IDSed0015405
OrganismSechium edule (Chayote v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG09:2116720..2118241
RNA-Seq ExpressionSed0015405
SyntenySed0015405
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]2.6e-3953.04Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKD-NNEIV
        MFLVRLE F PL+DATS LAQ+AK+ADV FTPL L ++VS+RSP FVATL++  + FT FS++ +  S +SL+PFHD ML+    SSMT+HL D  N++V
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKD-NNEIV

Query:  FRFEDSNHKL-QFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE
         RFE  +H +     EL   P Q   + +++Y  +F++ S +LRR+IKELPLF  D+V V  T  QVKFSI SKEII   E
Subjt:  FRFEDSNHKL-QFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]4.3e-4253.33Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV
        MFLVRL+ F PL DATSRLAQIA+EAD+ FTPL   ++ S+RSP FVA L+M   CF  + ++  H S +SLE FHD +L+     SMT+HL  N  +++
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV

Query:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE
         RFE S+H  +   EL   P QE ++ E+DY K+FSIDS DLRRVI+ LP+F  DS+ V AT  QVKFSI SKEI+   E
Subjt:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE

XP_022964072.1 uncharacterized protein LOC111464209 [Cucurbita moschata]4.8e-4153.67Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV
        MFLVR++ F PLVD TSRLAQIA+E+D+IFTPLSL L  S  SP F+A L++  QCFT++S+N  H S +SLE  HD +L+    SSMT+HL +N N + 
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV

Query:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF
         RFE  NH+ Q + ++  +P QE  +EEI+Y K  ++D  DLR+VIKELPLF  DSV V  T  +V+FSI S+E+IF
Subjt:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF

XP_023000630.1 uncharacterized protein LOC111494874 [Cucurbita maxima]1.2e-4455.93Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV
        MFLVRL+ F PLVD TSRLAQIA+E+D+IFTPLSL+L  S  SP F+ATL++  QCFT++S+N  HCS +SLE  HD +L+    S+MT+HL +N N +V
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV

Query:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF
         RFE  NH+ Q + +   +P QE  +EEI+Y K  ++DS DLR+VIKELPLF  DSV V  T  +V+FSI S+E+IF
Subjt:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF

XP_023514484.1 uncharacterized protein LOC111778743 [Cucurbita pepo subsp. pepo]1.3e-4154.24Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV
        MFLVR++ F PLVD TSRLAQI +E+D+IFTPLSL L  S  SP F+A L++  QCFT++S+N  H S +SLE  HD +L+    SSMT+HL +N N +V
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV

Query:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF
         RFE  NH+ Q + ++  +P QE  +EEI+Y K  ++DS DLR+VIKELPLF  DSV V  T  +V+FSI S+E+IF
Subjt:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.3e-3953.04Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKD-NNEIV
        MFLVRLE F PL+DATS LAQ+AK+ADV FTPL L ++VS+RSP FVATL++  + FT FS++ +  S +SL+PFHD ML+    SSMT+HL D  N++V
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKD-NNEIV

Query:  FRFEDSNHKL-QFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE
         RFE  +H +     EL   P Q   + +++Y  +F++ S +LRR+IKELPLF  D+V V  T  QVKFSI SKEII   E
Subjt:  FRFEDSNHKL-QFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE

A0A1S4E4N8 uncharacterized protein LOC1035022632.1e-4253.33Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV
        MFLVRL+ F PL DATSRLAQIA+EAD+ FTPL   ++ S+RSP FVA L+M   CF  + ++  H S +SLE FHD +L+     SMT+HL  N  +++
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV

Query:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE
         RFE S+H  +   EL   P QE ++ E+DY K+FSIDS DLRRVI+ LP+F  DS+ V AT  QVKFSI SKEI+   E
Subjt:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIE

A0A5D3BTK3 Uncharacterized protein6.1e-3446.84Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDNNEIVF
        MFLVRLE F PL+DATS LAQ+AK+ADV FTPL L ++VS+RSP FVATL++  + FT FS++ +  S +SL+PFHD ML+        LH         
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDNNEIVF

Query:  RFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIEVLKRRMKLESE
                     EL   P Q   + +++Y  +F++ S +LRR+IKELPLF  D+V V  T  QVKFSI SKEII   EV+K ++K  S+
Subjt:  RFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIEVLKRRMKLESE

A0A6J1HGU2 uncharacterized protein LOC1114642092.3e-4153.67Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV
        MFLVR++ F PLVD TSRLAQIA+E+D+IFTPLSL L  S  SP F+A L++  QCFT++S+N  H S +SLE  HD +L+    SSMT+HL +N N + 
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV

Query:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF
         RFE  NH+ Q + ++  +P QE  +EEI+Y K  ++D  DLR+VIKELPLF  DSV V  T  +V+FSI S+E+IF
Subjt:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF

A0A6J1KIW5 uncharacterized protein LOC1114948745.9e-4555.93Show/hide
Query:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV
        MFLVRL+ F PLVD TSRLAQIA+E+D+IFTPLSL+L  S  SP F+ATL++  QCFT++S+N  HCS +SLE  HD +L+    S+MT+HL +N N +V
Subjt:  MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDN-NEIV

Query:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF
         RFE  NH+ Q + +   +P QE  +EEI+Y K  ++DS DLR+VIKELPLF  DSV V  T  +V+FSI S+E+IF
Subjt:  FRFEDSNHKLQFQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTGCGGCTTGAGTGCTTTGGTCCTCTTGTGGATGCAACTTCTCGACTCGCTCAAATCGCGAAAGAAGCCGATGTTATCTTCACGCCGTTGTCGCTCCGGCT
TGTGGTCTCACACCGCTCCCCTCACTTCGTTGCAACGCTCGAAATGCCGTGCCAATGCTTCACGATGTTCTCCATCAACGGCCATCACTGCTCGAGCCTTTCCCTCGAAC
CCTTCCACGATGTAATGTTGGAAAGCATCTTTTGTTCTTCAATGACCCTCCATCTTAAAGACAACAACGAAATCGTTTTTCGATTCGAGGACTCGAATCATAAGCTGCAA
TTTCAACGTGAATTGCCATTTGTACCTAAGCAAGAAATGGAAATGGAAGAAATCGATTATCAAAAGTATTTCTCGATCGACTCGGGGGATTTGAGACGCGTTATAAAAGA
ACTACCTCTCTTTGAAGATGATTCAGTTTGGGTTATTGCAACGGATTTGCAAGTCAAATTCTCTATTGGTTCTAAAGAAATTATCTTTATTATAGAGGTTTTGAAAAGGA
GGATGAAACTCGAATCCGAATCGATCTCAATCCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTGCGGCTTGAGTGCTTTGGTCCTCTTGTGGATGCAACTTCTCGACTCGCTCAAATCGCGAAAGAAGCCGATGTTATCTTCACGCCGTTGTCGCTCCGGCT
TGTGGTCTCACACCGCTCCCCTCACTTCGTTGCAACGCTCGAAATGCCGTGCCAATGCTTCACGATGTTCTCCATCAACGGCCATCACTGCTCGAGCCTTTCCCTCGAAC
CCTTCCACGATGTAATGTTGGAAAGCATCTTTTGTTCTTCAATGACCCTCCATCTTAAAGACAACAACGAAATCGTTTTTCGATTCGAGGACTCGAATCATAAGCTGCAA
TTTCAACGTGAATTGCCATTTGTACCTAAGCAAGAAATGGAAATGGAAGAAATCGATTATCAAAAGTATTTCTCGATCGACTCGGGGGATTTGAGACGCGTTATAAAAGA
ACTACCTCTCTTTGAAGATGATTCAGTTTGGGTTATTGCAACGGATTTGCAAGTCAAATTCTCTATTGGTTCTAAAGAAATTATCTTTATTATAGAGGTTTTGAAAAGGA
GGATGAAACTCGAATCCGAATCGATCTCAATCCTATGA
Protein sequenceShow/hide protein sequence
MFLVRLECFGPLVDATSRLAQIAKEADVIFTPLSLRLVVSHRSPHFVATLEMPCQCFTMFSINGHHCSSLSLEPFHDVMLESIFCSSMTLHLKDNNEIVFRFEDSNHKLQ
FQRELPFVPKQEMEMEEIDYQKYFSIDSGDLRRVIKELPLFEDDSVWVIATDLQVKFSIGSKEIIFIIEVLKRRMKLESESISIL