CuGenDBv2

Gene ID	Sed0015444
Organism	Sechium edule (Chayote v1)
Description	transcription factor SCREAM2-like
Genome location	LG03:23061705..23063795
RNA-Seq Expression	Sed0015444
Synteny	Sed0015444
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595565.1 hypothetical protein SDJN03_12118, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-40

79.66

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Query:  MDSRERKKAAA-SSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV
        M SRERKKAAA SS+NH    +   STSSSAVVNVESL +GFLINVYLEKNSPGLLV+ILE F  LGLEVLDANVSCSDCF+LQA+GEENE TKI+KPQV
Subjt:  MDSRERKKAAA-SSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV

Query:  VKNAVKQAIKEWSDNNGQ
        VK AVKQAIKEWS++NGQ
Subjt:  VKNAVKQAIKEWSDNNGQ

XP_008464258.1 PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo]

1.1e-40

77.31

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Query:  MDSRERKK-AAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV
        M SRERKK AAA++ +HHNSK+ R STSSSAVVNVES+E+GFLINV+LE+NSPGLLV+ILE F  LGL VLDA++SCSDCF+LQA+GEENEG KIIK QV
Subjt:  MDSRERKK-AAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV

Query:  VKNAVKQAIKEWSDNNGQA
        VKNAVKQAIKEWS+++GQA
Subjt:  VKNAVKQAIKEWSDNNGQA

XP_022950375.1 uncharacterized protein LOC111453491 [Cucurbita moschata]

1.6e-44

82.2

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Query:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV
        M SRERKKAAASS+NHH SK+ R STSSSAVVNVE+LE+GFLINV+ E+NSPGLLV+ILE F  LGLEVLDA+VSCSDCF+LQA+GEENEGTKIIK QVV
Subjt:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV

Query:  KNAVKQAIKEWSDNNGQA
        KNAVKQAIKEWS++NGQA
Subjt:  KNAVKQAIKEWSDNNGQA

XP_022977370.1 uncharacterized protein LOC111477723 [Cucurbita maxima]

1.6e-44

82.2

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Query:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV
        M SRERKKAAASS+NHH SK+ R STSSSAVVNVE LE+GFLINV+ E+NSPGLLV+ILE F  LGLEVLDA+VSCSDCF+LQA+GEENEGTKIIK QVV
Subjt:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV

Query:  KNAVKQAIKEWSDNNGQA
        KNAVKQAIKEWS++NGQA
Subjt:  KNAVKQAIKEWSDNNGQA

XP_038882922.1 uncharacterized protein LOC120074022 [Benincasa hispida]

1.8e-43

83.05

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Query:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV
        M SRERKKAAASS  HH SK+ R STSSSA+VNVESLE+GFLINV+LE+NSPGLLV+ILE F  LGLEVLDANVSCSDCF+LQA+GEENEGTKIIK QVV
Subjt:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV

Query:  KNAVKQAIKEWSDNNGQA
        KNAVKQAIKEWS++NGQA
Subjt:  KNAVKQAIKEWSDNNGQA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L039 Uncharacterized protein

3.5e-40

76.47

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Query:  MDSRERKKAAASSIN--HHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQ
        M SRERKKAAA++ N  HHNSK+ R STSS+AVVNVES+E+GFLINV+LE+NSPGLLV+ILE F  LGL VLDA++SCSDCF+LQA GEENEG KIIK Q
Subjt:  MDSRERKKAAASSIN--HHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQ

Query:  VVKNAVKQAIKEWSDNNGQ
        VVKNAVKQAIKEWS+++GQ
Subjt:  VVKNAVKQAIKEWSDNNGQ

A0A1S3CLI8 uncharacterized protein LOC103502184

5.4e-41

77.31

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Query:  MDSRERKK-AAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV
        M SRERKK AAA++ +HHNSK+ R STSSSAVVNVES+E+GFLINV+LE+NSPGLLV+ILE F  LGL VLDA++SCSDCF+LQA+GEENEG KIIK QV
Subjt:  MDSRERKK-AAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV

Query:  VKNAVKQAIKEWSDNNGQA
        VKNAVKQAIKEWS+++GQA
Subjt:  VKNAVKQAIKEWSDNNGQA

A0A6J1GFJ5 uncharacterized protein LOC111453491

8.0e-45

82.2

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Query:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV
        M SRERKKAAASS+NHH SK+ R STSSSAVVNVE+LE+GFLINV+ E+NSPGLLV+ILE F  LGLEVLDA+VSCSDCF+LQA+GEENEGTKIIK QVV
Subjt:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV

Query:  KNAVKQAIKEWSDNNGQA
        KNAVKQAIKEWS++NGQA
Subjt:  KNAVKQAIKEWSDNNGQA

A0A6J1HSD7 uncharacterized protein LOC111466169

3.5e-40

77.97

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Query:  MDSRERKKAAA-SSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV
        M SRERKKAAA SS+NH    +   STSSSAVVNVESL +GFLINVY+EKNSPGLLV+ILE F  LGLEVLDANVSCSDCF+LQA+GEENE TK++KPQV
Subjt:  MDSRERKKAAA-SSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQV

Query:  VKNAVKQAIKEWSDNNGQ
        VK AVKQAIKEWS++NGQ
Subjt:  VKNAVKQAIKEWSDNNGQ

A0A6J1IM47 uncharacterized protein LOC111477723

8.0e-45

82.2

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Query:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV
        M SRERKKAAASS+NHH SK+ R STSSSAVVNVE LE+GFLINV+ E+NSPGLLV+ILE F  LGLEVLDA+VSCSDCF+LQA+GEENEGTKIIK QVV
Subjt:  MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVV

Query:  KNAVKQAIKEWSDNNGQA
        KNAVKQAIKEWS++NGQA
Subjt:  KNAVKQAIKEWSDNNGQA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)

7.4e-19

46.74

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Query:  PSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVVKNAVKQAIKEWSDNN
        P+   + +V VE+L+KGF+INV+  KN PG+LV +LE F ++GL VL+A  SC+D F L A+G ENE  + +  + VK AV  AI+ W + N
Subjt:  PSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVVKNAVKQAIKEWSDNN

AT3G56220.1 transcription regulators

2.4e-17

45.45

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Query:  NSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIG-EENEGTKIIKPQVVKNAVKQAIKEWSDNN
        + +  R S+  + +V VE+LEKGF+I V   KN  G+LV +LE F +LGL+V++A VSC+D F L AIG   N+    I  + VK AV +AI+ WSD++
Subjt:  NSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIG-EENEGTKIIKPQVVKNAVKQAIKEWSDNN

Sequences

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CDS sequence

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ATGGATTCAAGAGAAAGAAAGAAAGCGGCAGCTTCTTCAATAAATCATCACAACTCCAAAAAACTTCGTCCATCCACAAGCTCTAGTGCTGTGGTGAATGTGGAGAGTTT
AGAGAAAGGATTTCTAATAAACGTATATTTGGAAAAGAATTCACCCGGATTGCTTGTTAAGATTCTAGAAGTGTTTGCGAATTTGGGACTTGAAGTTCTTGATGCCAACG
TGTCTTGTTCCGATTGCTTCGAACTCCAAGCTATCGGGGAAGAGAATGAAGGCACCAAAATTATAAAGCCCCAAGTGGTGAAAAATGCAGTTAAGCAAGCAATCAAGGAA
TGGAGTGATAATAATGGGCAGGCATGA

mRNA sequence

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CTTGTTTAAGAGCTGGGGGAGAGGAAAAAAAAAGAAAAAGGCAAAAGCTTCTGGTGGCGCGTGGGCAGCGAGTGGAATAATTCGCGGCGGCCGGAAGACGGCGGCGTTTG
AATTTATTTTACCGGCGTCTTAGAAATGGATTCAAGAGAAAGAAAGAAAGCGGCAGCTTCTTCAATAAATCATCACAACTCCAAAAAACTTCGTCCATCCACAAGCTCTA
GTGCTGTGGTGAATGTGGAGAGTTTAGAGAAAGGATTTCTAATAAACGTATATTTGGAAAAGAATTCACCCGGATTGCTTGTTAAGATTCTAGAAGTGTTTGCGAATTTG
GGACTTGAAGTTCTTGATGCCAACGTGTCTTGTTCCGATTGCTTCGAACTCCAAGCTATCGGGGAAGAGAATGAAGGCACCAAAATTATAAAGCCCCAAGTGGTGAAAAA
TGCAGTTAAGCAAGCAATCAAGGAATGGAGTGATAATAATGGGCAGGCATGAAATATTAATACATATTTATTCCTTTTTTCTCTCCATTTTCTTTTCCCCCAAACAGGAT
ATCACTTCTGTGTATAGGGCAACAAATTTTCTACTGCCTTTTTCTTTTAATTCAACAACATTAATGAGAGGTAAATGAATTGAAGTTTATAAGATCTTTAGTTATGAACA
CACTTATGTCAAGTTAAACTATGACGGTTGTTCAATTTATGAATGTTGTGGATACATGTAGAACATGGAGTCGAG

Protein sequence

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MDSRERKKAAASSINHHNSKKLRPSTSSSAVVNVESLEKGFLINVYLEKNSPGLLVKILEVFANLGLEVLDANVSCSDCFELQAIGEENEGTKIIKPQVVKNAVKQAIKE
WSDNNGQA

Sed0015444 (gene) of Chayote v1 genome