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Sed0015447 (gene) of Chayote v1 genome

Gene IDSed0015447
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase III subunit RPC9
Genome locationLG04:34012617..34014844
RNA-Seq ExpressionSed0015447
SyntenySed0015447
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593875.1 VAN3-binding protein, partial [Cucurbita argyrosperma subsp. sororia]2.1e-1149.18Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+     QTREAIIEF                                       GDDGIQ LTEMVE+VFPAS  QS
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEK-EGVG
        TS+VAPKE KEAEA EK EGVG
Subjt:  TSKVAPKESKEAEATEK-EGVG

KAG7026218.1 DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-1149.18Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+     QTREAIIEF                                       GDDGIQ LTEMVE+VFPAS  QS
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEK-EGVG
        TS+VAPKE KEAEA EK EGVG
Subjt:  TSKVAPKESKEAEATEK-EGVG

XP_022930221.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita moschata]2.1e-1149.18Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+     QTREAIIEF                                       GDDGIQELT+MVE+VFPAS  QS
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEK-EGVG
        TS VAPKE KEAEA EK EGVG
Subjt:  TSKVAPKESKEAEATEK-EGVG

XP_023006759.1 uncharacterized protein LOC111499396 [Cucurbita maxima]1.8e-1044.07Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+    NQTREAIIEF                                       GDDGIQELTEMVE+VFP  QT+ 
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEKE
        TS+VAP E KEAE   ++
Subjt:  TSKVAPKESKEAEATEKE

XP_023513659.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita pepo subsp. pepo]2.1e-1148.36Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+     QTREAI+EF                                       GDDGIQELTEMVE+VFPA   QS
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEK-EGVG
        TS+VAPKE KEAEA EK EGVG
Subjt:  TSKVAPKESKEAEATEK-EGVG

TrEMBL top hitse value%identityAlignment
A0A6J1CCS4 DNA-directed RNA polymerase III subunit RPC92.8e-0942.28Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+     Q RE+IIEF                                       GDDGIQELTEMVE VFP  QTQ 
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEKEGVGDG
        T  VAPKE KE EA  ++  G+G
Subjt:  TSKVAPKESKEAEATEKEGVGDG

A0A6J1EQC1 DNA-directed RNA polymerase III subunit RPC91.0e-1149.18Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+     QTREAIIEF                                       GDDGIQELT+MVE+VFPAS  QS
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEK-EGVG
        TS VAPKE KEAEA EK EGVG
Subjt:  TSKVAPKESKEAEATEK-EGVG

A0A6J1H2X6 DNA-directed RNA polymerase III subunit RPC94.3e-1043.09Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+    NQTREAIIEF                                       GDDGIQELTEMVE+VFP  QT+ 
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEA-TEKEGVGD
        TS+  P E KEAE   E+E + D
Subjt:  TSKVAPKESKEAEA-TEKEGVGD

A0A6J1KG58 DNA-directed RNA polymerase III subunit RPC92.0e-1048.36Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+    NQTREAIIEF                                       GDDGIQELTEMVE+VFPA   QS
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEK-EGVG
        TS+VAP   KEAEA EK EGVG
Subjt:  TSKVAPKESKEAEATEK-EGVG

A0A6J1L324 DNA-directed RNA polymerase III subunit RPC98.8e-1144.07Show/hide
Query:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS
        +DPTRV    V  SEYK+YD LN+    NQTREAIIEF                                       GDDGIQELTEMVE+VFP  QT+ 
Subjt:  EDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEF--------------------------------------EGDDGIQELTEMVEKVFPASQTQS

Query:  TSKVAPKESKEAEATEKE
        TS+VAP E KEAE   ++
Subjt:  TSKVAPKESKEAEATEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATATTAGACCCTACAAATTTGGAAGATCCCACTAGGGTTCCTTGCGAAAGTGTTACGCAATCTGAGTACAAGATTTATGATATTTTGAATCGAAATCTTGTTCG
TAATCAAACGAGAGAGGCTATTATTGAGTTTGAAGGAGATGATGGAATTCAAGAGCTTACGGAGATGGTGGAAAAGGTGTTCCCTGCATCTCAAACTCAATCAACATCCA
AAGTAGCCCCGAAGGAGAGTAAAGAAGCCGAAGCCACGGAGAAGGAAGGAGTTGGGGATGGGATGAAAAACCTATGGAAACTACTTAAAGAGCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATATTAGACCCTACAAATTTGGAAGATCCCACTAGGGTTCCTTGCGAAAGTGTTACGCAATCTGAGTACAAGATTTATGATATTTTGAATCGAAATCTTGTTCG
TAATCAAACGAGAGAGGCTATTATTGAGTTTGAAGGAGATGATGGAATTCAAGAGCTTACGGAGATGGTGGAAAAGGTGTTCCCTGCATCTCAAACTCAATCAACATCCA
AAGTAGCCCCGAAGGAGAGTAAAGAAGCCGAAGCCACGGAGAAGGAAGGAGTTGGGGATGGGATGAAAAACCTATGGAAACTACTTAAAGAGCAGTAA
Protein sequenceShow/hide protein sequence
MKILDPTNLEDPTRVPCESVTQSEYKIYDILNRNLVRNQTREAIIEFEGDDGIQELTEMVEKVFPASQTQSTSKVAPKESKEAEATEKEGVGDGMKNLWKLLKEQ