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Sed0015463 (gene) of Chayote v1 genome

Gene IDSed0015463
OrganismSechium edule (Chayote v1)
DescriptionTNFR/CD27/30/40/95 cysteine-rich region
Genome locationLG01:15097226..15097537
RNA-Seq ExpressionSed0015463
SyntenySed0015463
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573550.1 hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia]5.3e-3170.59Show/hide
Query:  MERSSSSHSKITAAVILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPS
        M+ S   +S ITAAVI LMTA+ LT+  P D KLC DCIRD+MAL+CPACA PLRCMAQCLWGG SRS+C+ +CDS GAW RL +CKRCM SCKCSCT S
Subjt:  MERSSSSHSKITAAVILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPS

Query:  SS
        SS
Subjt:  SS

KAG6573554.1 hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2967.65Show/hide
Query:  MERSSSSHSKITAAVILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPS
        M+ S   HS ITA VI LMT + LT+    D KLC DCIRD+MAL+CPACA PLRCMAQCLWGG SRS+C+ +CD  GAW RL +CKRCM SCKCSCT S
Subjt:  MERSSSSHSKITAAVILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPS

Query:  SS
        SS
Subjt:  SS

KAG7012656.1 hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-3070.41Show/hide
Query:  SSSHSKITAAVILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPSSS
        +   + ITAAVI LMTA+ LT+  PTD KLC DCIRD+MAL+CPACA PLRCMAQCLWGG SRS+C+ +CD  GAW RL +CKRCM SCKCSCT SSS
Subjt:  SSSHSKITAAVILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPSSS

RVW58233.1 hypothetical protein CK203_111219 [Vitis vinifera]7.2e-2056.18Show/hide
Query:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC
        AAV++L+   WL  +     P+DG  C DCI ++M   CP+CA  LRCMA+CLWGG+S+SKC+ RCD  G  PRLS CK+CMS CKCSC
Subjt:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC

XP_010646205.1 PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera]7.2e-2056.18Show/hide
Query:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC
        AAV++L+   WL  +     P+DG  C DCI ++M   CP+CA  LRCMA+CLWGG+S+SKC+ RCD  G  PRLS CK+CMS CKCSC
Subjt:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC

TrEMBL top hitse value%identityAlignment
A0A0A0LW71 Uncharacterized protein1.2e-2865.52Show/hide
Query:  VILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPSS
        V++LMTAVWLT   P +GK+C DCIR++M  +CPACA PLRCMAQCLWGG SRS+C+NRCDS GAW  L++CK+C++ CKC C+ SS
Subjt:  VILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPSS

A0A438FE46 Uncharacterized protein3.5e-2056.18Show/hide
Query:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC
        AAV++L+   WL  +     P+DG  C DCI ++M   CP+CA  LRCMA+CLWGG+S+SKC+ RCD  G  PRLS CK+CMS CKCSC
Subjt:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC

A0A438JGC2 Uncharacterized protein1.3e-1956.18Show/hide
Query:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC
        AAV++L    WLT +     P+DG  C DCI ++M   CP+CA  L CMA+CLWGG+S+SKC+ RCD  G  PRLS CK+CMS CKCSC
Subjt:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC

A5AHI4 Uncharacterized protein2.9e-1955.06Show/hide
Query:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC
        AAV++L+   WL  +     P+DG  C DCI ++M   CP+CA  L CMA+CLWGG S+SKC+ RCD  G  PRLS CK+CMS CKCSC
Subjt:  AAVILLMTAVWLTAAR----PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC

B9HCG2 Uncharacterized protein1.9e-1862.86Show/hide
Query:  RPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC
        +P+DG  C DC+ D+M   CP C   L CMA+CLWGGSSRSKCI RCD  G  P LS CK+CMS CKCSC
Subjt:  RPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12064.1 unknown protein6.3e-1450.7Show/hide
Query:  PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCIN--RCDSAGAWPRLSTCKRCMSSCKCSC
        P     C  C+ ++M  +CP C   LRCMA+CLWGG ++ KC    RCD+A A P L  CKRC+S CKCSC
Subjt:  PTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCIN--RCDSAGAWPRLSTCKRCMSSCKCSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGATCATCAAGCTCACACTCAAAAATCACGGCGGCAGTGATTCTTCTAATGACTGCCGTCTGGCTAACGGCAGCTCGACCGACAGACGGAAAGTTGTGTACCGA
CTGCATCAGGGACAAGATGGCGCTGAACTGCCCGGCCTGCGCATCTCCTCTTCGCTGCATGGCCCAGTGCCTGTGGGGCGGCAGTTCGAGGTCGAAATGCATTAACCGGT
GCGATAGTGCCGGTGCGTGGCCAAGGCTCTCGACCTGCAAGCGTTGCATGTCGAGCTGCAAGTGCAGTTGCACCCCTTCTTCGAGTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGATCATCAAGCTCACACTCAAAAATCACGGCGGCAGTGATTCTTCTAATGACTGCCGTCTGGCTAACGGCAGCTCGACCGACAGACGGAAAGTTGTGTACCGA
CTGCATCAGGGACAAGATGGCGCTGAACTGCCCGGCCTGCGCATCTCCTCTTCGCTGCATGGCCCAGTGCCTGTGGGGCGGCAGTTCGAGGTCGAAATGCATTAACCGGT
GCGATAGTGCCGGTGCGTGGCCAAGGCTCTCGACCTGCAAGCGTTGCATGTCGAGCTGCAAGTGCAGTTGCACCCCTTCTTCGAGTGTATGA
Protein sequenceShow/hide protein sequence
MERSSSSHSKITAAVILLMTAVWLTAARPTDGKLCTDCIRDKMALNCPACASPLRCMAQCLWGGSSRSKCINRCDSAGAWPRLSTCKRCMSSCKCSCTPSSSV