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Sed0015467 (gene) of Chayote v1 genome

Gene IDSed0015467
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationContig00297:37675..39425
RNA-Seq ExpressionSed0015467
SyntenySed0015467
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QIT04170.1 ribosomal protein L16 [Sechium edule]7.2e-6296.8Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITSA
        ENIARKAISIAASKLPIRTQFITSA
Subjt:  ENIARKAISIAASKLPIRTQFITSA

YP_009560873.1 ribosomal protein L16 [Trichosanthes kirilowii]4.6e-6195.16Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

YP_009751943.1 ribosomal protein L16 [Cyclanthera pedata]3.6e-6195.97Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

YP_009752195.1 ribosomal protein L16 [Linnaeosicyos amara]7.9e-6194.35Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKA+SIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

YP_009752280.1 ribosomal protein L16 [Trichosanthes baviensis]4.6e-6195.16Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

TrEMBL top hitse value%identityAlignment
A0A6H0EQ66 50S ribosomal protein L16, chloroplastic3.5e-6296.8Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITSA
        ENIARKAISIAASKLPIRTQFITSA
Subjt:  ENIARKAISIAASKLPIRTQFITSA

A0A6H0ER52 50S ribosomal protein L16, chloroplastic1.7e-6195.97Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

A0A6H0ERE0 50S ribosomal protein L16, chloroplastic2.3e-6195.16Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

A0A6H0ESK3 50S ribosomal protein L16, chloroplastic2.3e-6195.16Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

A0A6M3RTV2 50S ribosomal protein L16, chloroplastic2.3e-6195.16Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

SwissProt top hitse value%identityAlignment
B1NWI7 50S ribosomal protein L16, chloroplastic7.4e-6291.13Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        ++ +GRMKG+++RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFI S
Subjt:  ENIARKAISIAASKLPIRTQFITS

Q09ME0 50S ribosomal protein L16, chloroplastic6.3e-6190.32Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        ++ +GRMKG+SYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEM GVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFI S
Subjt:  ENIARKAISIAASKLPIRTQFITS

Q0ZIY1 50S ribosomal protein L16, chloroplastic7.4e-6291.13Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        ++ +GRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFI S
Subjt:  ENIARKAISIAASKLPIRTQFITS

Q49KW1 50S ribosomal protein L16, chloroplastic1.7e-6190.32Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        ++ +GRMKG+SYRGNRICFG+YA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFI S
Subjt:  ENIARKAISIAASKLPIRTQFITS

Q4VZN1 50S ribosomal protein L16, chloroplastic4.4e-6292.74Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        +  +GRMKG+SYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEM GVA
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PIRTQFITS
Subjt:  ENIARKAISIAASKLPIRTQFITS

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 123.3e-4168Show/hide
Query:  QRRKGRM-KGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGV
        +  +GR+ KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAV+KPG+I+YEMGGV
Subjt:  QRRKGRM-KGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGV

Query:  AENIARKAISIAASKLPIRTQFITS
        +E +AR+AISIAASKLP +T+FI S
Subjt:  AENIARKAISIAASKLPIRTQFITS

ATCG00790.1 ribosomal protein L162.7e-5985.48Show/hide
Query:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA
        ++ +GR+KG+S RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAV+KPG+ILYEMGGV 
Subjt:  QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVA

Query:  ENIARKAISIAASKLPIRTQFITS
        ENIARKAISIAASK+PI+TQFI S
Subjt:  ENIARKAISIAASKLPIRTQFITS

ATMG00080.1 ribosomal protein L164.5e-2243.41Show/hide
Query:  RKGR-MKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRIL
        RKGR  +G    G ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A +  G+I 
Subjt:  RKGR-MKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRIL

Query:  YEMGGVAENIARKAISIAASKLPIRTQFI
        +EM GV+   AR+A ++AA K    T+F+
Subjt:  YEMGGVAENIARKAISIAASKLPIRTQFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGAGAAGGAAGGGAAGAATGAAAGGAATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACAC
GTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTATTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATT
TCAATAGCGGCGTCCAAACTGCCTATACGAACCCAATTCATTACTTCGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGAGAAGGAAGGGAAGAATGAAAGGAATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACAC
GTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTATTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATT
TCAATAGCGGCGTCCAAACTGCCTATACGAACCCAATTCATTACTTCGGCATAA
Protein sequenceShow/hide protein sequence
MDQRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAI
SIAASKLPIRTQFITSA