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Sed0015469 (gene) of Chayote v1 genome

Gene IDSed0015469
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG09:1964104..1968573
RNA-Seq ExpressionSed0015469
SyntenySed0015469
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150499.1 dynein light chain 1, cytoplasmic [Cucumis sativus]4.0e-4984.55Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQG L+ KS  EDRKPP      A TTTGKKIVIKSADMFGDVQK+A+DVAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

XP_008458417.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo]4.7e-5086.18Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGNLM KS  EDRKPP      A T TGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]8.0e-5086.18Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGNLM KS  EDRKP A A      TTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]3.0e-4985.37Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGNLM KS  EDRKP   A      TTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

XP_038906782.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]6.1e-5086.18Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGNLM KS  EDRKPPA A      TTGKKIVIKSADMFGDVQKEA++VAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A0A0KCI4 Dynein light chain1.9e-4984.55Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQG L+ KS  EDRKPP      A TTTGKKIVIKSADMFGDVQK+A+DVAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

A0A1S3C7T8 Dynein light chain2.3e-5086.18Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGNLM KS  EDRKPP      A T TGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain7.3e-4984.55Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGN M K+  EDRKP A A      TTGKKIVIKSADMFGDVQKEAVDVAI AFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain3.9e-5086.18Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGNLM KS  EDRKP A A      TTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

A0A6J1L253 Dynein light chain1.5e-4985.37Show/hide
Query:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV
        MS+DAKRSIQGNLM KS  EDRKP   A      TTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGR+FGSYV
Subjt:  MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYV

Query:  THETNHFVYFYVDQKAVLLFKSG
        THETNHFVYFY+DQKAVLLFKSG
Subjt:  THETNHFVYFYVDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic3.6e-2966.28Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD A +IKKEFDK++ PTWHCIVGR+FGSYVTHET HF+YFY+ Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic3.6e-2967.44Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD A +IKKEFDK++ PTWHCIVGR+FGSYVTHET HF+YFY+ Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic3.6e-2967.44Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD A +IKKEFDK++ PTWHCIVGR+FGSYVTHET HF+YFY+ Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic3.6e-2967.44Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD A +IKKEFDK++ PTWHCIVGR+FGSYVTHET HF+YFY+ Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic3.6e-2967.44Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD A +IKKEFDK++ PTWHCIVGR+FGSYVTHET HF+YFY+ Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein9.8e-1460.38Show/hide
Query:  KDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKS
        K  A  +KK+FD  +GP WHCIVG SFGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 118.6e-1037.65Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K  A  IKKEFD+R+G  W C+VG +FG + TH    F+YF ++    L+FK
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein7.5e-3866.1Show/hide
Query:  KRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETN
        K+S+ G   A++  +DR+  +     A+   GK+ VIKSADM  D+QKEA+++AI+AFEK+SVEKD AE IKKEFDK+HG TWHCIVGR+FGSYVTHETN
Subjt:  KRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETN

Query:  HFVYFYVDQKAVLLFKSG
        HFVYFY+DQKAVLLFKSG
Subjt:  HFVYFYVDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein1.7e-1040Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFK
        K V+   DM   ++++A+ +A  A +   V +    A +IKKEFD+ +G  W CIVG  FGS+VTH +  F++F V    +LLFK
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein3.4e-1447.62Show/hide
Query:  DRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAV
        +R   A   AAA   T   + I +ADM G +Q  A   A   + + EK S  K  A  +KKEFDK +GP WHCIVG SFGS+VTH T  F+YF +D+  V
Subjt:  DRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYFYVDQKAV

Query:  LLFKS
        LLFK+
Subjt:  LLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGCGATGCGAAGCGAAGCATTCAAGGGAATCTAATGGCGAAATCCGATGAGGAAGATCGGAAACCTCCGGCTGCGGCGGCGGCGGCGGCGGCGACTACTACTGG
AAAGAAGATTGTGATCAAGAGTGCCGACATGTTCGGCGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGCTGCATTTGAAAAGCATAGTGTTGAGAAGGATGCAGCAG
AGTGGATTAAGAAAGAGTTTGATAAGAGGCATGGACCGACTTGGCATTGCATTGTTGGCCGTAGTTTTGGTTCGTACGTAACACACGAGACGAACCACTTCGTTTACTTC
TACGTGGATCAGAAAGCAGTTTTACTATTCAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
GCTGTACCGAAAAACTAATTTCACCGACGGCTCCATTTAAATTCGAGAAAAAGGGTAAAAACCCTTTTTATTCTCTCAGATTCTCAGAAATCACAGTTTTCCGGTGATGG
AGAAAGTAATTCCAAATTCCTCGAAGCGATAAAGCTACAGAGATCGACAAAAAACCTCCTCTCATCGGAGCTTCCAGCTTCCGAATCGGCGGCGGAGATCGGAGAAGAAG
AAGAAGAAGAAGAATCGGAAAAAAAGAAATGAGCAGCGATGCGAAGCGAAGCATTCAAGGGAATCTAATGGCGAAATCCGATGAGGAAGATCGGAAACCTCCGGCTGCGG
CGGCGGCGGCGGCGGCGACTACTACTGGAAAGAAGATTGTGATCAAGAGTGCCGACATGTTCGGCGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGCTGCATTTGAA
AAGCATAGTGTTGAGAAGGATGCAGCAGAGTGGATTAAGAAAGAGTTTGATAAGAGGCATGGACCGACTTGGCATTGCATTGTTGGCCGTAGTTTTGGTTCGTACGTAAC
ACACGAGACGAACCACTTCGTTTACTTCTACGTGGATCAGAAAGCAGTTTTACTATTCAAATCTGGTTGATAAACATGTATATATTATGCTAAAAATCGTTCCCAAGGGA
TGGCATAATAATTGAAGATTTGGGCTTTGAAGACATGCTCCTTTCAAGGCCCTAGGTTTGAGACCCACTTGTAACATTACTCTTTTAATGTCTCCCAGTGCCTGACTTAG
GGACGGGCGTGTTTACCCTTATTAAAAAAAAAAAAAAAAAATTGGTTACTGAAAATCATTTAAATGATGATATCCTTGTGGACAAGACAAGTGCCTTCTCTTCTGCAACC
TCGTCTTTTTTATTCCTTATCTAATGATTTTGCTTTAGCCACTTTAGCCTTTAAAGTAAAAACATAATCAGCTTGTTTGCCTA
Protein sequenceShow/hide protein sequence
MSSDAKRSIQGNLMAKSDEEDRKPPAAAAAAAATTTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEWIKKEFDKRHGPTWHCIVGRSFGSYVTHETNHFVYF
YVDQKAVLLFKSG