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Sed0015482 (gene) of Chayote v1 genome

Gene IDSed0015482
OrganismSechium edule (Chayote v1)
DescriptionIleal sodium/bile acid cotransporter, putative
Genome locationLG03:6298632..6299548
RNA-Seq ExpressionSed0015482
SyntenySed0015482
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050246.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa]2.4e-3862.75Show/hide
Query:  LNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNT
        +N L+S I+ IN RN  I       + LPIC+  QRP PAN S+   N+GKTILGLTFQAVLALFI++PNS  PLL HLFAAAVLISFAVSFAG+ LQN 
Subjt:  LNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNT

Query:  FQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        F  +A  FEKIGAL AA GVCI++S LL+HQ+FAWI WLA  F  + F+LSF+
Subjt:  FQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK

KAG6579137.1 hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia]3.9e-2858.78Show/hide
Query:  ASDCLPICMHQQRPKPANDS----QNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFEKIGALFAAFGVCI
        ASD LP      RP P  DS     NLGK + GLTFQAVLALFIS P SC PLL+H+FAAA+LISFA+S A L LQ  +  +A    KIGAL AA G C 
Subjt:  ASDCLPICMHQQRPKPANDS----QNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFEKIGALFAAFGVCI

Query:  ISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        I+S+LL HQ F+WI WLAC F  + F+LSFK
Subjt:  ISSLLLVHQDFAWICWLACAFFFIVFLLSFK

KGN49803.1 hypothetical protein Csa_004681 [Cucumis sativus]1.3e-3659.15Show/hide
Query:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFA
        M S+SQQ S ++N L+SLI++IN RN  I       + LPIC+  Q   PAN S+   N+G TILGLTFQAVLALFI++  S  PLL HLF AAVLISFA
Subjt:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFA

Query:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        VSF G+ LQ+ F  +A  FEKIGAL AA GVCI++S LL+HQ+FAWI WLAC F  + FLLSF+
Subjt:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK

KGN49808.1 hypothetical protein Csa_004650 [Cucumis sativus]8.0e-4262.2Show/hide
Query:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMH-QQRPK-PANDSQNLGKTILGLTFQAVLALFIST-PNSCSPLLVHLFAAAVLISFA
        MASTS Q S +++A  S I TI++RNYG+    T S+CLP+ +  QQ P+  A+ SQ LGK IL L+FQAVLALFIS+ P S  PLL+H FAAAV ISFA
Subjt:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMH-QQRPK-PANDSQNLGKTILGLTFQAVLALFIST-PNSCSPLLVHLFAAAVLISFA

Query:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        VSFA L L N+F   A  FEK+GALF+AFGVC I+S LLVHQ+FAWICW+AC F  IVF LSFK
Subjt:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK

XP_022146444.1 uncharacterized protein LOC111015658 [Momordica charantia]7.8e-2963.71Show/hide
Query:  MASTSQQASANLNALFSLISTINRRNYGISFF------ATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLI
        MAST QQ S ++NAL S I+ IN RN GIS F      +T SDCLPIC+  QRP PA  SQ+LGKTILGLTFQAVLALFIS P+S   L   LF AAVLI
Subjt:  MASTSQQASANLNALFSLISTINRRNYGISFF------ATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLI

Query:  SFAVSFAGLLLQNTFQNLARFFEK
        SFAVSFAGL LQ  +  +A  FEK
Subjt:  SFAVSFAGLLLQNTFQNLARFFEK

TrEMBL top hitse value%identityAlignment
A0A0A0KJN8 Uncharacterized protein6.4e-3759.15Show/hide
Query:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFA
        M S+SQQ S ++N L+SLI++IN RN  I       + LPIC+  Q   PAN S+   N+G TILGLTFQAVLALFI++  S  PLL HLF AAVLISFA
Subjt:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFA

Query:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        VSF G+ LQ+ F  +A  FEKIGAL AA GVCI++S LL+HQ+FAWI WLAC F  + FLLSF+
Subjt:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK

A0A0A0KJP2 Uncharacterized protein3.9e-4262.2Show/hide
Query:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMH-QQRPK-PANDSQNLGKTILGLTFQAVLALFIST-PNSCSPLLVHLFAAAVLISFA
        MASTS Q S +++A  S I TI++RNYG+    T S+CLP+ +  QQ P+  A+ SQ LGK IL L+FQAVLALFIS+ P S  PLL+H FAAAV ISFA
Subjt:  MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMH-QQRPK-PANDSQNLGKTILGLTFQAVLALFIST-PNSCSPLLVHLFAAAVLISFA

Query:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        VSFA L L N+F   A  FEK+GALF+AFGVC I+S LLVHQ+FAWICW+AC F  IVF LSFK
Subjt:  VSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK

A0A0A0KQ03 Uncharacterized protein3.9e-2648.8Show/hide
Query:  MAST-SQQASANLNALFSLISTINRRNYGIS---FFATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFIS-TPNSCSPLLVHLFAAAVLIS
        MA T   + S ++N L SLI  +  RN GIS   +   ASDCLPI +  QRP P N  Q  G T L LTFQA++ LF+S  P+S SPL   LFAA +L S
Subjt:  MAST-SQQASANLNALFSLISTINRRNYGIS---FFATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFIS-TPNSCSPLLVHLFAAAVLIS

Query:  FAVSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        F  S+ G++LQ  F   A+  +  GALFAA G CII SLLL + +F WICWLA       F++SFK
Subjt:  FAVSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK

A0A5A7U7U1 Putative Ileal sodium/bile acid cotransporter1.2e-3862.75Show/hide
Query:  LNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNT
        +N L+S I+ IN RN  I       + LPIC+  QRP PAN S+   N+GKTILGLTFQAVLALFI++PNS  PLL HLFAAAVLISFAVSFAG+ LQN 
Subjt:  LNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNT

Query:  FQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
        F  +A  FEKIGAL AA GVCI++S LL+HQ+FAWI WLA  F  + F+LSF+
Subjt:  FQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK

A0A6J1CY58 uncharacterized protein LOC1110156583.8e-2963.71Show/hide
Query:  MASTSQQASANLNALFSLISTINRRNYGISFF------ATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLI
        MAST QQ S ++NAL S I+ IN RN GIS F      +T SDCLPIC+  QRP PA  SQ+LGKTILGLTFQAVLALFIS P+S   L   LF AAVLI
Subjt:  MASTSQQASANLNALFSLISTINRRNYGISFF------ATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLI

Query:  SFAVSFAGLLLQNTFQNLARFFEK
        SFAVSFAGL LQ  +  +A  FEK
Subjt:  SFAVSFAGLLLQNTFQNLARFFEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAACTTCACAACAAGCCTCAGCGAATCTGAATGCCCTTTTCTCCCTTATCTCTACAATCAATCGAAGAAACTATGGAATCAGCTTTTTTGCCACTGCATCAGA
CTGTCTTCCAATTTGCATGCATCAGCAAAGACCTAAACCAGCCAATGACTCTCAGAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTCTGGCTTTGTTCA
TCAGCACACCAAATTCATGTTCTCCACTTTTGGTACATCTTTTTGCTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAGGTCTTCTCCTTCAAAACACGTTCCAG
AACCTCGCGCGTTTCTTTGAAAAGATCGGTGCCCTTTTCGCTGCATTTGGTGTGTGCATCATATCGAGTCTTCTTCTTGTTCATCAGGACTTTGCTTGGATCTGCTGGTT
GGCTTGTGCCTTCTTTTTTATTGTCTTTCTTTTATCATTCAAGTGA
mRNA sequenceShow/hide mRNA sequence
CAAAAAGTGAAAGGAAAAATGCAATTTCTATGAAAATTTCTACAATTTGTAGTAGAACTTCTATAAATACACTTTAAAAAAAATGTTTTAGAATAACAGAAAATTCTGTC
TTTATATCTAGAATACTCCAATCAACATTAAAACAGGAGAAAAAAAAAAATTCAAAATTGGTCCAAGAGTCCCTTGGAAGTATTGAGAAAATTTTCAATTTGTTATTGTT
TGTTTTTCCCAATGGCTTCAACTTCACAACAAGCCTCAGCGAATCTGAATGCCCTTTTCTCCCTTATCTCTACAATCAATCGAAGAAACTATGGAATCAGCTTTTTTGCC
ACTGCATCAGACTGTCTTCCAATTTGCATGCATCAGCAAAGACCTAAACCAGCCAATGACTCTCAGAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTCT
GGCTTTGTTCATCAGCACACCAAATTCATGTTCTCCACTTTTGGTACATCTTTTTGCTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAGGTCTTCTCCTTCAAA
ACACGTTCCAGAACCTCGCGCGTTTCTTTGAAAAGATCGGTGCCCTTTTCGCTGCATTTGGTGTGTGCATCATATCGAGTCTTCTTCTTGTTCATCAGGACTTTGCTTGG
ATCTGCTGGTTGGCTTGTGCCTTCTTTTTTATTGTCTTTCTTTTATCATTCAAGTGATCTTCTTTTACAGCAATTCTCAATCCTGTTAGAAGTAGAATAATGGATATCCA
ATTCTATTGGATATAGGATCAAATAAGATAGGGTAGAAAGGGGATAGGTCTACATTGAGAGATTGAGTGAGTGATTCATCTCGGGATTGAGAGTGTTCTTAAGATAGGAA
GGGTCCAAGTACCTTGAACACTTGGTTTATCTTTGAT
Protein sequenceShow/hide protein sequence
MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQ
NLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK