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Sed0015580 (gene) of Chayote v1 genome

Gene IDSed0015580
OrganismSechium edule (Chayote v1)
DescriptionNuclear nucleic acid-binding protein C1D
Genome locationLG05:31337731..31341572
RNA-Seq ExpressionSed0015580
SyntenySed0015580
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0010468 - regulation of gene expression (biological process)
GO:0000178 - exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608310.1 Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1880.28Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VRES VVPEKVMD VK T+ NVEQVQTHL SFLSIA PDVLA+M+PLQRAQSMLLL+RATTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
KAG7037658.1 Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1880.28Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VRES VVPEKVMD VK T+ NVEQVQTHL SFLSIA PDVLA+M+PLQRAQSMLLL+RATTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
XP_004145496.1 nuclear nucleic acid-binding protein C1D [Cucumis sativus]2.8e-1878.87Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VR+  VVPEKVMD VK T+ NVEQVQTHL SFLSIA+PDVLA+MQPLQRAQSMLLLAR TTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
XP_022939979.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata]5.6e-1980.28Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VRES VVPEKVMD VK T+ NVEQVQTHL SFLSIA+PDVLA+M+PLQRAQSMLLL+RATTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
XP_023524382.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo]1.6e-1878.87Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VRES VVPEKVMD VK T+ NVEQV+THL SFLSIA+PDVLA+M+PLQRAQSMLLL+RATTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
TrEMBL top hitse value%identityAlignment
A0A0A0L118 Nuclear nucleic acid-binding protein C1D1.4e-1878.87Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VR+  VVPEKVMD VK T+ NVEQVQTHL SFLSIA+PDVLA+MQPLQRAQSMLLLAR TTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
A0A6J1F700 Nuclear nucleic acid-binding protein C1D2.3e-1877.46Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VR+S VVPEKVMD VK T++NVEQVQTHL S LSIA+P+VLA+MQPLQRAQSMLLLAR TTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
A0A6J1FIR0 Nuclear nucleic acid-binding protein C1D2.7e-1980.28Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VRES VVPEKVMD VK T+ NVEQVQTHL SFLSIA+PDVLA+M+PLQRAQSMLLL+RATTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
A0A6J1IN17 Nuclear nucleic acid-binding protein C1D2.3e-1877.46Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VR+S VVPEKVMD VK T++NVEQVQTHL S LSIA+P+VLA+MQPLQRAQSMLLLAR TTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
A0A6J1J0U0 Nuclear nucleic acid-binding protein C1D3.0e-1877.46Show/hide
Query:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        MEG VRES VVPEK MD VK T+ +VEQVQTHL SFLSIA+PDVLA+M+PLQRAQSMLLL+RATTTL A +
Subjt:  MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G25080.1 Sas10/Utp3/C1D family2.1e-0848.39Show/hide
Query:  VVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR
        VVPE  ++ V +T+  +++++  L   L++A+P+VLA MQPLQRA++M LLA ATTTL   R
Subjt:  VVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAAGTGTTCGAGAATCTGTTGTGGTGCCCGAGAAAGTAATGGATTTAGTGAAGAAGACAGTGAAGAATGTAGAACAAGTTCAAACTCACCTTACTTCCTTCCT
GTCCATCGCCAAGCCTGATGTTCTTGCTCGAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGGGCTACCACCACTCTCGTCGCATGTAGGAGAGATT
AA
mRNA sequenceShow/hide mRNA sequence
AAAAAATCGGCGCAAGTGGAGACCGGAAGTAATTAGGGCAAATTGTCGCCATAAACCCCATTCGCGTCTGCAAATTCACAACGACGACGATCCAATCTCCCCGCCGCCGC
CGCCATTGCTGTCGTAAATCATCTCCTTCTAAGGATTTGAATTTCGTATCTTCGATTACCGTGTGAATCTGAGATAGTGACGGAATTCAAAATTGGGGGCAAATATGGAG
GGAAGTGTTCGAGAATCTGTTGTGGTGCCCGAGAAAGTAATGGATTTAGTGAAGAAGACAGTGAAGAATGTAGAACAAGTTCAAACTCACCTTACTTCCTTCCTGTCCAT
CGCCAAGCCTGATGTTCTTGCTCGAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGGGCTACCACCACTCTCGTCGCATGTAGGAGAGATTAAGCTT
GTATAAAGAGAAGGTAGAATAGTTCATAAGCTTGAGTAAAGCACCATTGAAGCGTTCTACTACCTTGAATTCTCAAGCAGCAGCTTGCTTTATTGAACATTCTTTGCCCG
ATCTCACCCAAGAGCAAAAGCAGAGTATGAGGGATATTAGTAAGGGAAAGGAACAAAAAATGAAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCGTCT
GAAAAATAATCTGTTCAAATTGCTGCGAAGGAATTTCTTGAGAAAGCAGCACGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAGGGACCACTATGTCGAGACACTTC
AGATGATGACCTGCTGAGGATCGGTACCTGTTAATTACATTTTTTTCTAACTTTTGGCCTCGTTTTTTCAAAAATAAATGTAACTTTTCCTTATGATTGTTGGTAGAGTA
TAAGTTTAATCATTTTTCCACTTTAGTTCTATTGCCATTCTTTTACCACTAGTTATTAGCTTGATAAATGATAAGCTTTTCGATAGCGTATGCATGGTCAATTTTAATAC
AAATTGTAGTATGTCTGCTTCTGAACCTCTTTGATGTGTTTTATCTTCGTGATATATTTTATTGTTATAGTTAAGTCAATGCATAGCTCATCTGGTTAAGACATATATTC
TCAATTAAAAGATCAAAAAGACATTATTTCTTCACAAGAATTGTCTCCCTTTCCCTCACCAAAATGAATACCATAAAGTGAACTTACATGATTTCAAGATTGTACCAACA
ACTACCGCATTGTATCGTTTTCAACGAACATGTATTCTCTCGATCTCCTTTTCGATCATGCACGTGGACATGATTTTTTTCATCAATTTTCAAGAGTGCGGGATATAGCA
ATGGTGAAATTGACACTCTCGTGACTGTGGGTTTATCCTGATTAACTATGTGTGACAACATCTTCATCGCTGGTTTTGTTTTCATCCAGAAGGTTTTTCGCTAGGATTTA
TCTACTGTCTTACTCTATATTGGCTTCCCCCCTTCTACCGTATTCATCCATCATGTACTTGTTTTAATAGGTCTTTGAAAGGCATGATTTTAGTTTTGTTCATTCAAACA
TAACACCTGCCTTCATTTGTTGATTTTTATGTGCCTGTGTTAGTTTTATGTTTTAACACTTCCTCATGTTTACATCTTTCAGGACTATGAAAACCAGATACACATGTCCC
CTTAATAACCCAACTCCTGAAGAATTGATCCATTTTGAAGTTACCTTTTTCTTTCCTTCTAGTTACTACCTACAATATTATTAAGTCGTTTTCCCTTTCCTTTGCATTGA
TGGAGTTTTCAGTCCCATCATGAGTTACTATTAGACTCTTCCTGGTTTCTTCAGCCCCAAATTTTTCTGAACAAGACAGGCTCATGATAAAACTGAGTAGGTGCATTTTC
ACATGTAAATTAGCTTACCTAGGTAGCTACCTTTTCACATGTAAATTATTCTACTTTTGTGGCTGACTTTCTAGTTCTTTTTGGGTCTGTATATCAGGCATTATCTTGTT
TTGTGGATTAGCCTTTTGCTATAAATTAAAAATAGTATGTTCTATGTGATAAATGTTATGATTGTTTGCATCGAATGTGATTTTACGTGGAAACCCCCTAAAAAAATTAG
GGTAAAAACCATGGGCAAGGATAGAAGAACTTCATTATAAAAATAGGAGTTACAAACTTTCTCTCTTACAAAGTAGCAACAAACTCTCTTATAAGGAAAAACTCTCTCTA
TTTTTATCTCACACCCTCACTCACTTAGATGTGGGTTGTCTTGGAGATTTTGGGATGGTTTGCCAACTAATGACATCACCTATTTATACTACTCATAAACTTGGGCTCCA
AGTATGATCCAATGGTCCACATTTTTCCTTGGTAATCAAGTAAATCATGTGGCCATGATTTTGCCACAAC
Protein sequenceShow/hide protein sequence
MEGSVRESVVVPEKVMDLVKKTVKNVEQVQTHLTSFLSIAKPDVLARMQPLQRAQSMLLLARATTTLVACRRD