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Sed0015636 (gene) of Chayote v1 genome

Gene IDSed0015636
OrganismSechium edule (Chayote v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationLG03:10810302..10810631
RNA-Seq ExpressionSed0015636
SyntenySed0015636
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047903.1 retrotransposon polyprotein [Cucumis melo var. makuwa]2.8e-1452.5Show/hide
Query:  AGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTID
        A   S++FGH LS+VL VKLDE NY LW  MV+++L  QK+DGFVLGTK +P+++I   DE G  +   N  F+EWV +D
Subjt:  AGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTID

KGN65642.1 hypothetical protein Csa_019906 [Cucumis sativus]3.1e-1345.74Show/hide
Query:  MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSL
        +AE    +   + S  + P      T   I++SFGHPL T L++KLD+K + LWRGMVLA+LRGQKVDG+VLG K QP + +++ DE+    S+
Subjt:  MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSL

XP_022143579.1 ankyrin repeat-containing protein NPR4-like [Momordica charantia]2.3e-1654.22Show/hide
Query:  TTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTIDQ
        T    I+ SFGHPLST LTVKLD+KNY LW+GMVLA+L GQKVDG+VL TK  P++      ++G      NP ++EW  +DQ
Subjt:  TTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTIDQ

XP_022157748.1 uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]1.3e-1644.55Show/hide
Query:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF
        +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA+LRGQK DG+VLGT  +P + + + +  G    L  NP +
Subjt:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF

Query:  DEWVTIDQTL
         EW  +DQ L
Subjt:  DEWVTIDQTL

XP_022157750.1 uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]1.3e-1644.55Show/hide
Query:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF
        +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA+LRGQK DG+VLGT  +P + + + +  G    L  NP +
Subjt:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF

Query:  DEWVTIDQTL
         EW  +DQ L
Subjt:  DEWVTIDQTL

TrEMBL top hitse value%identityAlignment
A0A0A0LXU0 Uncharacterized protein1.5e-1345.74Show/hide
Query:  MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSL
        +AE    +   + S  + P      T   I++SFGHPL T L++KLD+K + LWRGMVLA+LRGQKVDG+VLG K QP + +++ DE+    S+
Subjt:  MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSL

A0A5A7TWE0 Retrotransposon polyprotein1.4e-1452.5Show/hide
Query:  AGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTID
        A   S++FGH LS+VL VKLDE NY LW  MV+++L  QK+DGFVLGTK +P+++I   DE G  +   N  F+EWV +D
Subjt:  AGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTID

A0A6J1CPQ7 ankyrin repeat-containing protein NPR4-like1.1e-1654.22Show/hide
Query:  TTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTIDQ
        T    I+ SFGHPLST LTVKLD+KNY LW+GMVLA+L GQKVDG+VL TK  P++      ++G      NP ++EW  +DQ
Subjt:  TTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTIDQ

A0A6J1DTZ7 uncharacterized protein LOC111024384 isoform X26.5e-1744.55Show/hide
Query:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF
        +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA+LRGQK DG+VLGT  +P + + + +  G    L  NP +
Subjt:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF

Query:  DEWVTIDQTL
         EW  +DQ L
Subjt:  DEWVTIDQTL

A0A6J1DU77 uncharacterized protein LOC111024384 isoform X16.5e-1744.55Show/hide
Query:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF
        +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA+LRGQK DG+VLGT  +P + + + +  G    L  NP +
Subjt:  LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHF

Query:  DEWVTIDQTL
         EW  +DQ L
Subjt:  DEWVTIDQTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAACCACTTTGTTGTCGTCTTCATCTAGCAACAGTACTGTATTACCTCCAAATAGAATCCCTCCGACCACCGCAGGTTTGATCAGCTCGTCTTTTGGTCACCC
TCTTAGCACTGTTCTCACGGTTAAACTTGATGAGAAAAATTATCTTCTTTGGAGAGGAATGGTTCTTGCTATTCTTCGAGGACAAAAGGTAGATGGATTTGTTTTAGGCA
CTAAGGAACAACCAGCTGAGTTAATCGAAGCTGTTGATGAATCTGGAGGTAAAGTTTCTTTACCCAACCCTCATTTTGATGAATGGGTAACAATCGACCAAACTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAACCACTTTGTTGTCGTCTTCATCTAGCAACAGTACTGTATTACCTCCAAATAGAATCCCTCCGACCACCGCAGGTTTGATCAGCTCGTCTTTTGGTCACCC
TCTTAGCACTGTTCTCACGGTTAAACTTGATGAGAAAAATTATCTTCTTTGGAGAGGAATGGTTCTTGCTATTCTTCGAGGACAAAAGGTAGATGGATTTGTTTTAGGCA
CTAAGGAACAACCAGCTGAGTTAATCGAAGCTGTTGATGAATCTGGAGGTAAAGTTTCTTTACCCAACCCTCATTTTGATGAATGGGTAACAATCGACCAAACTCTCTAA
Protein sequenceShow/hide protein sequence
MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTIDQTL