; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0015678 (gene) of Chayote v1 genome

Gene IDSed0015678
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase
Genome locationLG03:23633323..23634113
RNA-Seq ExpressionSed0015678
SyntenySed0015678
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067527.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

TYK22485.1 F15O4.13 [Cucumis melo var. makuwa]2.3e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.3e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

XP_022158803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]2.1e-11289.59Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGKNGVEVD EKVKAIRDWP P   SEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVF+WGEMQ++AFNEL+ KLTNA LLVLPNF+KTFEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASGLGIGAVLMQDG+PLMYFS KLNGA LNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKI
        N+VADALSRRYNLF    +K+
Subjt:  NIVADALSRRYNLFTSLTAKI

TrEMBL top hitse value%identityAlignment
A0A5A7VK67 Transposon Ty3-I Gag-Pol polyprotein1.1e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

A0A5D3C3D3 F15O4.131.1e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

A0A5D3CK70 F15O4.131.1e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

A0A5D3DRJ1 F15O4.131.1e-10378.85Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGK+GV+VD EKVKAIR+WP PTNASEVRSFHGLASFYRRFIKDFS+IA+PL +LVKK+V F+W E Q+ AFNEL+EKL  AP L LPNF+K+FEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASG+GIGAVLMQ+ +P+M+FS KLNGA LNY TYDKEL ALVR L+VWQHYLWP+EFVIHTDHESLKHLKGQ+KLN+RHAKWVEFIETFPYVI YK+GKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKILGFEHI
        N+VADALSRRY LF+SL+AK+LGF+H+
Subjt:  NIVADALSRRYNLFTSLTAKILGFEHI

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252681.0e-11289.59Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD
        +VGKNGVEVD EKVKAIRDWP P   SEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVF+WGEMQ++AFNEL+ KLTNA LLVLPNF+KTFEIECD
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECD

Query:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
        ASGLGIGAVLMQDG+PLMYFS KLNGA LNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD
Subjt:  ASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKD

Query:  NIVADALSRRYNLFTSLTAKI
        N+VADALSRRYNLF    +K+
Subjt:  NIVADALSRRYNLFTSLTAKI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.0e-4040.78Show/hide
Query:  NGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQ-DKAFNELEEKLTNAPLLVLPNFEKTFEIECDASG
        +G++ + EK++AI+ +PIPT   E+++F GL  +YR+FI +F+ IA P+   +KKN+       + D AF +L+  ++  P+L +P+F K F +  DAS 
Subjt:  NGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQ-DKAFNELEEKLTNAPLLVLPNFEKTFEIECDASG

Query:  LGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKDNIV
        + +GAVL QDG PL Y S  LN   +NY T +KEL A+V   + ++HYL  R F I +DH+ L  L      N +  +W   +  F + IKY +GK+N V
Subjt:  LGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKDNIV

Query:  ADALSR
        ADALSR
Subjt:  ADALSR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy4.7e-3840.81Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVK-----------KNVVFQWGEMQDKAFNELEEKLTNAP-LLVL
        +V K+G + D EKVKAI+++P P    +VRSF GLAS+YR FIKDF+ IA P+ D++K           K +  ++ E Q  AF  L   L +   +L  
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVK-----------KNVVFQWGEMQDKAFNELEEKLTNAP-LLVL

Query:  PNFEKTFEIECDASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLW-PREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIE
        P+F+K F++  DAS  GIGAVL Q+GRP+   S  L     NY T ++EL A+V  L   Q++L+  RE  I TDH+ L         N +  +W  +I+
Subjt:  PNFEKTFEIECDASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLW-PREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIE

Query:  TFPYVIKYKQGKDNIVADALSRR
             + YK GK+N VADALSR+
Subjt:  TFPYVIKYKQGKDNIVADALSRR

P20825 Retrovirus-related Pol polyprotein from transposon 2973.6e-3838.57Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQ-DKAFNELEEKLTNAPLLVLPNFEKTFEIEC
        +V  +G++ +  KVKAI  +PIPT   E+R+F GL  +YR+FI +++ IA P+   +KK       +++  +AF +L+  +   P+L LP+FEK F +  
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQ-DKAFNELEEKLTNAPLLVLPNFEKTFEIEC

Query:  DASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGK
        DAS L +GAVL Q+G P+ + S  LN   LNY   +KEL A+V   + ++HYL  R+F+I +DH+ L+ L    +   +  +W   +  + + I Y +GK
Subjt:  DASGLGIGAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGK

Query:  DNIVADALSR
        +N VADALSR
Subjt:  DNIVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.6e-3335.56Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVK-----------KNVVFQWGEMQDKAFNELEEKLTNAPLLVLP
        +V  +G++ D +KV+AI + P PT+  E++ F G+ S+YR+FI+D++ +A PL +L +             V     E   ++FN+L+  L ++ +L  P
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVK-----------KNVVFQWGEMQDKAFNELEEKLTNAPLLVLP

Query:  NFEKTFEIECDASGLGIGAVLMQD----GRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFV-IHTDHESLKHLKGQSKLNRRHAKWVE
         F K F +  DAS   IGAVL QD     RP+ Y S  LN    NY T +KE+ A++ +L   + YL+    + ++TDH+ L    G    N +  +W  
Subjt:  NFEKTFEIECDASGLGIGAVLMQD----GRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFV-IHTDHESLKHLKGQSKLNRRHAKWVE

Query:  FIETFPYVIKYKQGKDNIVADALSR
         IE +   + YK GK N+VADALSR
Subjt:  FIETFPYVIKYKQGKDNIVADALSR

Q9UR07 Transposon Tf2-11 polyprotein5.0e-3236.71Show/hide
Query:  EKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECDASGLGIGAVLM
        E +  +  W  P N  E+R F G  ++ R+FI   S +  PLN+L+KK+V ++W   Q +A   +++ L + P+L   +F K   +E DAS + +GAVL 
Subjt:  EKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECDASGLGIGAVLM

Query:  Q---DGR--PLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWP--REFVIHTDHESL--KHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKDNI
        Q   D +  P+ Y+S K++ A LNY   DKE+ A++++L+ W+HYL      F I TDH +L  +        N+R A+W  F++ F + I Y+ G  N 
Subjt:  Q---DGR--PLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWP--REFVIHTDHESL--KHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKDNI

Query:  VADALSR
        +ADALSR
Subjt:  VADALSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.0e-1640Show/hide
Query:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTF
        ++   GV  D  K++A+  WP P N +E+R F GL  +YRRF+K++  I  PL +L+KKN + +W EM   AF  L+  +T  P+L LP+ +  F
Subjt:  LVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAACATGTTAGTTGGTAAAAATGGAGTAGAAGTGGACATTGAGAAAGTTAAGGCAATTCGCGATTGGCCAATACCAACAAATGCAAGTGAGGTAAGGAGTTTTCA
TGGGTTAGCTAGCTTTTATAGGAGGTTTATAAAGGACTTTAGTACCATAGCTGCACCATTGAATGATTTGGTAAAAAAAAATGTTGTGTTCCAATGGGGGGAAATGCAAG
ATAAAGCCTTTAATGAACTTGAGGAGAAATTAACCAATGCACCATTACTTGTCTTGCCTAACTTTGAAAAGACATTTGAAATTGAGTGTGATGCAAGTGGTTTGGGCATA
GGTGCTGTTTTAATGCAAGATGGAAGGCCTTTGATGTACTTTAGTGTAAAACTAAATGGGGCAGTATTGAACTATCCTACCTATGATAAAGAATTGTTTGCTTTAGTTCG
TACATTGCAGGTATGGCAACACTACTTATGGCCTAGAGAGTTCGTGATTCACACTGATCATGAGAGCTTGAAGCATCTTAAGGGTCAAAGTAAATTGAACCGCCGGCATG
CAAAGTGGGTAGAATTTATTGAAACATTTCCCTATGTGATCAAATATAAGCAAGGTAAAGATAATATCGTGGCTGATGCATTGTCAAGAAGGTACAATCTCTTTACTTCT
CTTACTGCAAAAATTCTTGGATTTGAGCACATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAACATGTTAGTTGGTAAAAATGGAGTAGAAGTGGACATTGAGAAAGTTAAGGCAATTCGCGATTGGCCAATACCAACAAATGCAAGTGAGGTAAGGAGTTTTCA
TGGGTTAGCTAGCTTTTATAGGAGGTTTATAAAGGACTTTAGTACCATAGCTGCACCATTGAATGATTTGGTAAAAAAAAATGTTGTGTTCCAATGGGGGGAAATGCAAG
ATAAAGCCTTTAATGAACTTGAGGAGAAATTAACCAATGCACCATTACTTGTCTTGCCTAACTTTGAAAAGACATTTGAAATTGAGTGTGATGCAAGTGGTTTGGGCATA
GGTGCTGTTTTAATGCAAGATGGAAGGCCTTTGATGTACTTTAGTGTAAAACTAAATGGGGCAGTATTGAACTATCCTACCTATGATAAAGAATTGTTTGCTTTAGTTCG
TACATTGCAGGTATGGCAACACTACTTATGGCCTAGAGAGTTCGTGATTCACACTGATCATGAGAGCTTGAAGCATCTTAAGGGTCAAAGTAAATTGAACCGCCGGCATG
CAAAGTGGGTAGAATTTATTGAAACATTTCCCTATGTGATCAAATATAAGCAAGGTAAAGATAATATCGTGGCTGATGCATTGTCAAGAAGGTACAATCTCTTTACTTCT
CTTACTGCAAAAATTCTTGGATTTGAGCACATTTGA
Protein sequenceShow/hide protein sequence
MSNMLVGKNGVEVDIEKVKAIRDWPIPTNASEVRSFHGLASFYRRFIKDFSTIAAPLNDLVKKNVVFQWGEMQDKAFNELEEKLTNAPLLVLPNFEKTFEIECDASGLGI
GAVLMQDGRPLMYFSVKLNGAVLNYPTYDKELFALVRTLQVWQHYLWPREFVIHTDHESLKHLKGQSKLNRRHAKWVEFIETFPYVIKYKQGKDNIVADALSRRYNLFTS
LTAKILGFEHI