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Sed0015680 (gene) of Chayote v1 genome

Gene IDSed0015680
OrganismSechium edule (Chayote v1)
DescriptionSANT domain-containing protein
Genome locationLG10:29095490..29097910
RNA-Seq ExpressionSed0015680
SyntenySed0015680
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598441.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]4.9e-2776.09Show/hide
Query:  SSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYS---KHYS--NFIHEEQRSFIPSFS
        SS+WSSKQNK+FENALTVYDK+SPDRWQK+A  VG GKTAEEVKRHYE+LVEDVHNIETG+VPLPNYS   KHYS   F+ EEQR F  S +
Subjt:  SSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYS---KHYS--NFIHEEQRSFIPSFS

XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]1.2e-3082.8Show/hide
Query:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR
        +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+LVEDVHNIETGKVPLPNYSKHYS  NF+ EEQR
Subjt:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR

XP_023002559.1 protein RADIALIS-like 4 [Cucurbita maxima]9.9e-2877.42Show/hide
Query:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYS----KHYSNFIHEEQR
        SSSSSSSS S+ WSSKQNK+FENALTVYDK+SPDRWQK+A  VG GKTAEEVKRHYE+LVEDVHNIE G++PLPNYS    ++YSNF+ EEQR
Subjt:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYS----KHYSNFIHEEQR

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]1.2e-3081.91Show/hide
Query:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS---NFIHEEQR
        +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+LVEDVHNIETGKVPLPNYSKHYS   NF+ EEQR
Subjt:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS---NFIHEEQR

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]5.2e-2979.35Show/hide
Query:  SSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR
        +SS+SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+A  +G GKTAEEVK HY++LVEDVHNIETG+VPLPNYSKHYS  NF+ EEQR
Subjt:  SSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein6.0e-3178Show/hide
Query:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS---NFIHEEQRSFIPSF
        +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+LVEDVHNIETGKVPLPNYSKHYS   NF+ EEQR  +  F
Subjt:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS---NFIHEEQRSFIPSF

A0A1S3BBR2 protein RADIALIS-like 46.0e-3182.8Show/hide
Query:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR
        +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+LVEDVHNIETGKVPLPNYSKHYS  NF+ EEQR
Subjt:  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR

A0A6J1CRB5 protein RADIALIS-like 3 isoform X13.1e-2779.07Show/hide
Query:  SSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY-SKHYSNFIHEEQR
        SSSS SS WSSKQNKLFENALTVYDKESP+RWQ +AR VG GKTAEEVK HY++LVEDVHNIE+G+VPLPNY +K YSNF+ E+QR
Subjt:  SSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY-SKHYSNFIHEEQR

A0A6J1CT30 protein RADIALIS-like 6 isoform X23.1e-2779.07Show/hide
Query:  SSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY-SKHYSNFIHEEQR
        SSSS SS WSSKQNKLFENALTVYDKESP+RWQ +AR VG GKTAEEVK HY++LVEDVHNIE+G+VPLPNY +K YSNF+ E+QR
Subjt:  SSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY-SKHYSNFIHEEQR

A0A6J1KQS6 protein RADIALIS-like 44.8e-2877.42Show/hide
Query:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYS----KHYSNFIHEEQR
        SSSSSSSS S+ WSSKQNK+FENALTVYDK+SPDRWQK+A  VG GKTAEEVKRHYE+LVEDVHNIE G++PLPNYS    ++YSNF+ EEQR
Subjt:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYS----KHYSNFIHEEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.5e-1861.84Show/hide
Query:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY
        +SSS SS  S +W++KQNK FE AL  YD+++P+RWQ +A+VVG GKT EEVKRHYE+LV+D+++IE G VP PNY
Subjt:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY

Q1A173 Protein RADIALIS-like 67.9e-2063.75Show/hide
Query:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN
        +S+S S  S W+  QNK+FE AL VYDK++PDRW  +A+ VG GKT EEVKRHY+ILVED+ NIETG+VPLPNY    SN
Subjt:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN

Q58FS3 Transcription factor RADIALIS1.6e-1754.65Show/hide
Query:  SSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSNFIHEEQR
        +S+      WS+K+NK FE AL VYDK++PDRW  +AR V  G+T EEVK+HYEILVED+  IE+GKVP PNY     N   +E+R
Subjt:  SSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSNFIHEEQR

Q6NNN0 Protein RADIALIS-like 31.3e-1755Show/hide
Query:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN
        +S+S S S++W+ K+NKLFE AL  YD+++PDRW  +AR VG GK+AEEV+RHYE+L+ DV++IE+G+ P PNY  + +N
Subjt:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN

Q8GW75 Protein RADIALIS-like 51.3e-1968.92Show/hide
Query:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY
        +SSS S SS+W+SKQNK+FE AL VYDK++PDRWQ +A+ VGS K+AEEVKRHY+ILVED+ NIE   VPLP Y
Subjt:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 59.6e-2168.92Show/hide
Query:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY
        +SSS S SS+W+SKQNK+FE AL VYDK++PDRWQ +A+ VGS K+AEEVKRHY+ILVED+ NIE   VPLP Y
Subjt:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY

AT1G75250.1 RAD-like 65.6e-2163.75Show/hide
Query:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN
        +S+S S  S W+  QNK+FE AL VYDK++PDRW  +A+ VG GKT EEVKRHY+ILVED+ NIETG+VPLPNY    SN
Subjt:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN

AT1G75250.2 RAD-like 65.6e-2163.75Show/hide
Query:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN
        +S+S S  S W+  QNK+FE AL VYDK++PDRW  +A+ VG GKT EEVKRHY+ILVED+ NIETG+VPLPNY    SN
Subjt:  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSN

AT2G18328.1 RAD-like 46.4e-1756.16Show/hide
Query:  SSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY
        +SSS  +S+W+++++K FE AL  +DK++PDRWQK+AR VG GK+ EEVKRHYE+L+ DV++IE+G+ P P Y
Subjt:  SSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY

AT4G39250.1 RAD-like 11.1e-1961.84Show/hide
Query:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY
        +SSS SS  S +W++KQNK FE AL  YD+++P+RWQ +A+VVG GKT EEVKRHYE+LV+D+++IE G VP PNY
Subjt:  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTTCTAGTTCTTCATCATCATCATCTTCAAGCTGCTCGAGCGCGTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCGTTGACGGTGTACGACAAAGAGTC
GCCGGACAGGTGGCAGAAGATGGCGAGAGTCGTCGGATCGGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATCCTGGTTGAGGACGTCCATAATATTGAGACCG
GCAAAGTTCCTTTGCCCAATTACTCTAAACATTACTCCAACTTTATTCACGAAGAACAAAGGTCATTTATTCCCTCTTTCTCTTTCTCTAACCAATGTTTAGGGATCCAA
ACATACCGCCCGATCACTAAAGGGTCTAAAGCTACAGTGATTTTTTTTATTTTTGGATTTTGGTTGTTTGTTTTAAAAAAAAAAATCGTATATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTTCTAGTTCTTCATCATCATCATCTTCAAGCTGCTCGAGCGCGTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCGTTGACGGTGTACGACAAAGAGTC
GCCGGACAGGTGGCAGAAGATGGCGAGAGTCGTCGGATCGGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATCCTGGTTGAGGACGTCCATAATATTGAGACCG
GCAAAGTTCCTTTGCCCAATTACTCTAAACATTACTCCAACTTTATTCACGAAGAACAAAGGTCATTTATTCCCTCTTTCTCTTTCTCTAACCAATGTTTAGGGATCCAA
ACATACCGCCCGATCACTAAAGGGTCTAAAGCTACAGTGATTTTTTTTATTTTTGGATTTTGGTTGTTTGTTTTAAAAAAAAAAATCGTATATGTTTGA
Protein sequenceShow/hide protein sequence
MSSSSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSNFIHEEQRSFIPSFSFSNQCLGIQ
TYRPITKGSKATVIFFIFGFWLFVLKKKIVYV