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Sed0015696 (gene) of Chayote v1 genome

Gene IDSed0015696
OrganismSechium edule (Chayote v1)
DescriptionRegulator of nonsense transcripts 1
Genome locationLG11:34156687..34164503
RNA-Seq ExpressionSed0015696
SyntenySed0015696
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
GO:0048571 - long-day photoperiodism (biological process)
GO:0042742 - defense response to bacterium (biological process)
GO:0010182 - sugar mediated signaling pathway (biological process)
GO:0009867 - jasmonic acid mediated signaling pathway (biological process)
GO:0009863 - salicylic acid mediated signaling pathway (biological process)
GO:0009611 - response to wounding (biological process)
GO:0006412 - translation (biological process)
GO:0008380 - RNA splicing (biological process)
GO:0000932 - P-body (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR041679 - DNA2/NAM7 helicase-like, C-terminal
IPR045055 - DNA2/NAM7-like helicase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3023019.1 regulator of nonsense transcripts 1 homolog [Olea europaea subsp. europaea]5.5e-2548.99Show/hide
Query:  SDVIC----------LSNFRFRQ------------------GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGT
        +DVIC          L+NFRFRQ                   H +   +     +  AGL Q        LGVK IRLQVQY M P+LSEFPSNSFYEGT
Subjt:  SDVIC----------LSNFRFRQ------------------GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGT

Query:  LQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LQNGVTIN+R S GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

CAA3023020.1 regulator of nonsense transcripts 1 homolog [Olea europaea subsp. europaea]5.5e-2548.99Show/hide
Query:  SDVIC----------LSNFRFRQ------------------GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGT
        +DVIC          L+NFRFRQ                   H +   +     +  AGL Q        LGVK IRLQVQY M P+LSEFPSNSFYEGT
Subjt:  SDVIC----------LSNFRFRQ------------------GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGT

Query:  LQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LQNGVTIN+R S GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

GAV89382.1 UPF1_Zn_bind domain-containing protein/AAA_11 domain-containing protein/AAA_12 domain-containing protein [Cephalotus follicularis]7.1e-2574.68Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

KAG2283167.1 hypothetical protein Bca52824_054387 [Brassica carinata]1.4e-2547.4Show/hide
Query:  SDVIC----------LSNFRFRQ-----------------------GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNS
        +DVIC          LSNFRFRQ                        H +   +     +  AGL Q        LG+K IRLQVQY M P+LSEFPSNS
Subjt:  SDVIC----------LSNFRFRQ-----------------------GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNS

Query:  FYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        FYEGTLQNGVT+N+RL+TGIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  FYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

KZN04760.1 hypothetical protein DCAR_005597 [Daucus carota subsp. sativus]1.5e-2755.15Show/hide
Query:  SDVIC----------LSNFRFRQ-----GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLST
        +DVIC          L+NFRFRQ      H +   +     +  AGL Q        LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+R ST
Subjt:  SDVIC----------LSNFRFRQ-----GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLST

Query:  GIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  GIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

TrEMBL top hitse value%identityAlignment
A0A166D5Q4 Helicase ATP-binding domain-containing protein7.4e-2855.15Show/hide
Query:  SDVIC----------LSNFRFRQ-----GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLST
        +DVIC          L+NFRFRQ      H +   +     +  AGL Q        LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+R ST
Subjt:  SDVIC----------LSNFRFRQ-----GHVEFSFIANWDLSLCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLST

Query:  GIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  GIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

A0A1Q3DAA5 UPF1_Zn_bind domain-containing protein/AAA_11 domain-containing protein/AAA_12 domain-containing protein3.4e-2574.68Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

A0A6J1E6Q5 regulator of nonsense transcripts 1 homolog5.9e-2574.68Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+R STGIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

A0A7J7C6B0 Regulator of nonsense transcripts 13.4e-2574.68Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

A0A7J7CLY5 Regulator of nonsense transcripts 14.5e-2574.68Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

SwissProt top hitse value%identityAlignment
O76512 Regulator of nonsense transcripts 19.7e-1753.16Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LG++  RLQVQY M P LSEFPSN FY+G+LQNGVT N R  TG+D+ WP PN+P FF+     + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

Q92900 Regulator of nonsense transcripts 12.3e-1854.43Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LG++ IRLQVQY M P+LS FPSN FYEG+LQNGVT   R+  G DF WP P++PMFFYV    + ++ S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

Q98TR3 Putative regulator of nonsense transcripts 19.4e-2047.62Show/hide
Query:  ANWDLSLC-----AGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESR
        A+W   +C     AGL Q        LG++ IRLQVQY M P+LS FPSN FYEG+LQNGVT   R+  G DF WP P +PMFFYV    + ++ S  S 
Subjt:  ANWDLSLC-----AGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESR

Query:  IKKNE
        + + E
Subjt:  IKKNE

Q9EPU0 Regulator of nonsense transcripts 12.3e-1854.43Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LG++ IRLQVQY M P+LS FPSN FYEG+LQNGVT   R+  G DF WP P++PMFFYV    + ++ S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

Q9FJR0 Regulator of nonsense transcripts 1 homolog1.1e-2569.62Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LG+K IRLQVQY M P+LSEFPSNSFYEGTLQNGVTI +R +TGIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE

Arabidopsis top hitse value%identityAlignment
AT5G47010.1 RNA helicase, putative8.1e-2769.62Show/hide
Query:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE
        LG+K IRLQVQY M P+LSEFPSNSFYEGTLQNGVTI +R +TGIDFPWP PNRPMFFYVQ+  + +S S  S + + E
Subjt:  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAAATACAAAGCCCTCAAGAGAGGTACTCAGATGTTATTTGCTTGTCAAATTTTAGATTTCGCCAGGGGCATGTGGAGTTTTCATTCATTGCCAACTGGGACCT
GTCATTATGTGCAGGGCTGCCCCAACCCCTTGGTGTAAAACAAATTAGGCTGCAGGTGCAATATTGTATGCTCCCATCACTTTCTGAATTTCCTTCTAATAGCTTCTATG
AGGGAACACTACAAAATGGAGTTACCATCAACCAAAGGCTATCAACAGGCATTGACTTCCCATGGCCATTTCCCAACCGTCCAATGTTCTTTTATGTCCAGGTGTTAATT
GATTCAGTCAGTTTCAGTCCAGAGAGCAGAATAAAGAAAAATGAGAGGGATCTATCTTGA
mRNA sequenceShow/hide mRNA sequence
AAAACCCTTTCCACAAACTTGAACCTTAAATGCCGCCTGTTCCTCTTCGTTTGCTACCTTTAGCTGTGCAGCAGCGATGAGAAAAATACAAAGCCCTCAAGAGAGGTACT
CAGATGTTATTTGCTTGTCAAATTTTAGATTTCGCCAGGGGCATGTGGAGTTTTCATTCATTGCCAACTGGGACCTGTCATTATGTGCAGGGCTGCCCCAACCCCTTGGT
GTAAAACAAATTAGGCTGCAGGTGCAATATTGTATGCTCCCATCACTTTCTGAATTTCCTTCTAATAGCTTCTATGAGGGAACACTACAAAATGGAGTTACCATCAACCA
AAGGCTATCAACAGGCATTGACTTCCCATGGCCATTTCCCAACCGTCCAATGTTCTTTTATGTCCAGGTGTTAATTGATTCAGTCAGTTTCAGTCCAGAGAGCAGAATAA
AGAAAAATGAGAGGGATCTATCTTGAGGGCG
Protein sequenceShow/hide protein sequence
MRKIQSPQERYSDVICLSNFRFRQGHVEFSFIANWDLSLCAGLPQPLGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLI
DSVSFSPESRIKKNERDLS