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Sed0015712 (gene) of Chayote v1 genome

Gene IDSed0015712
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG11:6492530..6493468
RNA-Seq ExpressionSed0015712
SyntenySed0015712
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041796.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-0935.04Show/hide
Query:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMY
        R  K  WT  E+A L+E L+ LV    W+ +NGTFRP YL +LE  M  ++PG        FQ T         SSGS +KR      AD+ D++  AM 
Subjt:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMY

Query:  MQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYL
             ++ I+EWP      E+ +C+  + +L  I  L
Subjt:  MQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYL

TYK03073.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-0932.69Show/hide
Query:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTKEEFQGTPSSH-----NDGAASS-------GSSRKRKRSTT
        R  K +WT  E+A L+E L+ LV   GW+ DNGTF+P YLN+L   +  +IP G  + +  +     S+       D A  +        S  KRKR   
Subjt:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTKEEFQGTPSSH-----NDGAASS-------GSSRKRKRSTT

Query:  AADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC
        AAD  DI+  A+      +  I+EWP  Q    S + +  V +L  I  L  ++ C
Subjt:  AADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC

XP_026662506.2 uncharacterized protein LOC113463064 [Phoenix dactylifera]1.8e-0854.72Show/hide
Query:  KRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL
        KR WT  EDAKL+E L+ +V   GWKGDNG FRP +   LE  M++++PGC L
Subjt:  KRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]3.5e-0952.63Show/hide
Query:  GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL
        G+  K  W+ +EDAKL+E+L+ LV+  GW+ DNGTFRP YL  LE  + E++PGC L
Subjt:  GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]4.2e-1054.39Show/hide
Query:  GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL
        G+  K  W+ +EDAKL+E+L+ LV+  GW+ DNGTFRP YL  LE  + E++PGCTL
Subjt:  GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL

TrEMBL top hitse value%identityAlignment
A0A5A7SM12 Retrotransposon protein3.2e-0851.79Show/hide
Query:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL
        R  K +WT  E+A L+E L+ LV   GW+ DNGTFRP YLN+L   M  +IPGC +
Subjt:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL

A0A5A7TD34 Retrotransposon protein2.5e-0832.24Show/hide
Query:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSH--------NDGAASS-------GSSRKRKRS
        R  K +WT  E+A L+E L+ LV   GW+ DNGTF+  Y+N+L   +  +IP    G  E F    S+          D A  +        S  KRKR 
Subjt:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSH--------NDGAASS-------GSSRKRKRS

Query:  TTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYL
          AAD  D++  A+      +  I+EWP  Q    S + +  V +L  I  L
Subjt:  TTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYL

A0A5A7UQK4 Retrotransposon protein3.2e-0838.54Show/hide
Query:  WTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGT-----------KEEFQGTPSSHNDGAASSGSSRKRKRSTTAADL
        WT  E+  L+E LM  V + GWK DNGTFRPRYL +L   M E++PGC +             K  FQ      + GA + G + KR     A  L
Subjt:  WTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGT-----------KEEFQGTPSSHNDGAASSGSSRKRKRSTTAADL

A0A5D3BTT4 Retrotransposon protein5.9e-1032.69Show/hide
Query:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTKEEFQGTPSSH-----NDGAASS-------GSSRKRKRSTT
        R  K +WT  E+A L+E L+ LV   GW+ DNGTF+P YLN+L   +  +IP G  + +  +     S+       D A  +        S  KRKR   
Subjt:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTKEEFQGTPSSH-----NDGAASS-------GSSRKRKRSTT

Query:  AADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC
        AAD  DI+  A+      +  I+EWP  Q    S + +  V +L  I  L  ++ C
Subjt:  AADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC

A0A5D3DUT7 Retrotransposon protein1.0e-0935.04Show/hide
Query:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMY
        R  K  WT  E+A L+E L+ LV    W+ +NGTFRP YL +LE  M  ++PG        FQ T         SSGS +KR      AD+ D++  AM 
Subjt:  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMY

Query:  MQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYL
             ++ I+EWP      E+ +C+  + +L  I  L
Subjt:  MQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAAC
ATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATG
ATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAA
GTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGA
CAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAG
TTGTTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAAC
ATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATG
ATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAA
GTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGA
CAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAG
TTGTTCCATAA
Protein sequenceShow/hide protein sequence
MEGRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVK
VISEWPKEQWSVESDLCERCVAELGKITYLFDVEDCDKPGENGTISCQSTTVQVVTPPSHATVHQMSVLMLEQVVP