CuGenDBv2

Gene ID	Sed0015818
Organism	Sechium edule (Chayote v1)
Description	V-set and immunoglobulin domain-containing protein
Genome location	LG03:6188332..6190761
RNA-Seq Expression	Sed0015818
Synteny	Sed0015818
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601944.1 hypothetical protein SDJN03_07177, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-47

82.22

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Query:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI
        AMA LL  T  FPFPPLP+ PARA F  S  SPAVRFSGD  + RALRVVTTRAGASTS++IFAFSIPFSLILVT L ALKIGD+LDKKFLEELA+NQAI
Subjt:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI

Query:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAEV
        ME D+ENKDGSSEISFEEKPALPRTRNRPKREAEV
Subjt:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAEV

KAG7032638.1 hypothetical protein SDJN02_06688 [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-48

82.22

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Query:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI
        AMA LL  T  FPFPPLP+ PARAFF  S  SPAVRFSGD  + RALRVVTTRAGASTS++IFAFSIPFSLILVT L ALKIGD+LDKKFLEELA+NQAI
Subjt:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI

Query:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAEV
        ME D+ENKDGSSEISFE KPALPRTRNRPKREAEV
Subjt:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAEV

XP_022961614.1 uncharacterized protein LOC111462310 [Cucurbita moschata]

1.4e-47

82.09

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Query:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI
        AMA LL  T  FPFPPLP+ PARAFF  S  SPAVRFSGD  + RALRVVTTRAGASTS++IFAFSIPFSLILVT L ALKIGD+LDKKFLEELA+NQAI
Subjt:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI

Query:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAE
        ME D+ENKDGSSEI FEEKPALPRTRNRPKREAE
Subjt:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAE

XP_023525740.1 uncharacterized protein LOC111789252 [Cucurbita pepo subsp. pepo]

1.7e-48

83.08

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Query:  LLKTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIMEADD
        L+ T  FPFPPLP+ PARAFF  S  SPAVRFSGD  + RALRVVTTRAGASTS++IFAFSIPFSLILVT L ALKIGD+LDKKFLEELA+NQAIME D+
Subjt:  LLKTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIMEADD

Query:  ENKDGSSEISFEEKPALPRTRNRPKREAEV
        ENKDGSSEISFEEKPALPRTRNRPKREAEV
Subjt:  ENKDGSSEISFEEKPALPRTRNRPKREAEV

XP_038875344.1 uncharacterized protein LOC120067823 [Benincasa hispida]

4.3e-44

76.55

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Query:  MSIP-----IAMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKF
        MSIP     IAMA LL  T  FPF  L VAP RAFF  SNFSPAV FSG   + R LRVVTTRAGASTS++IFAFSIP SLIL+TVL ALKIGD+LDKKF
Subjt:  MSIP-----IAMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKF

Query:  LEELAINQAIMEADDENKDGSSEISFEEKPALPRTRNRPKREAEV
        LEELA+NQAIME D+ENKD  SEISFEEKPALPRTRNRPKREAEV
Subjt:  LEELAINQAIMEADDENKDGSSEISFEEKPALPRTRNRPKREAEV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CYA7 uncharacterized protein LOC111015566

2.8e-41

71.23

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Query:  MSIPI--AMASL-----LKTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKK
        MSIP   AMAS       +   FP PPLPVAP R FF  S  SPA+RFS D P P  LR++TTRAGASTS++IFAFSIPFSLIL+TVL ALKIGD+LDKK
Subjt:  MSIPI--AMASL-----LKTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKK

Query:  FLEELAINQAIMEADDENKDGSSEISFEEKPALPRTRNRPKREAEV
        FLEE+ +N+AIMEAD+ENKD +SEISFE KPALPRTRNRPKREAEV
Subjt:  FLEELAINQAIMEADDENKDGSSEISFEEKPALPRTRNRPKREAEV

A0A6J1FJ66 uncharacterized protein LOC111444753

3.3e-42

78.23

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Query:  FPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIMEADDENKDGS
        FP   LPVAPARAFF  S  SPAVRF GD  + + LR+VTTRAGASTS++IFAFSIPFSL+LVT L ALKIGD+LDKKFLEELA+NQAIME D+ENKD  
Subjt:  FPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIMEADDENKDGS

Query:  SEISFEEKPALPRTRNRPKREAEV
        S ISFEEKPALPRTRNRPKREAEV
Subjt:  SEISFEEKPALPRTRNRPKREAEV

A0A6J1HEK5 uncharacterized protein LOC111462310

7.0e-48

82.09

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Query:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI
        AMA LL  T  FPFPPLP+ PARAFF  S  SPAVRFSGD  + RALRVVTTRAGASTS++IFAFSIPFSLILVT L ALKIGD+LDKKFLEELA+NQAI
Subjt:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI

Query:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAE
        ME D+ENKDGSSEI FEEKPALPRTRNRPKREAE
Subjt:  MEADDENKDGSSEISFEEKPALPRTRNRPKREAE

A0A6J1JTZ0 uncharacterized protein LOC111487491

4.7e-44

79.7

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Query:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI
        AMA LL  T  FPF   P+ PARAFF  S  SPAVRFSGD  + R LRVVTTRAGASTS++IFAFSIPFSLILVT L ALKIGD+LDKKFLEELA+NQAI
Subjt:  AMASLL-KTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAI

Query:  MEADDENKDGSSEISFEEKPALPRTRNRPKREA
        ME D+ENKDGSSEISFEEKPALPRTRNRPKREA
Subjt:  MEADDENKDGSSEISFEEKPALPRTRNRPKREA

A0A6J1K146 uncharacterized protein LOC111489690

1.4e-40

76.61

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Query:  FPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIMEADDENKDGS
        FP   LPV PARA F  S  SPAVRF GD+ + + LR+VTTRAGASTS++IFAFSI FSLILVT L ALKIGD+LDKKFLEELA+NQAIME D+ENKD  
Subjt:  FPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIMEADDENKDGS

Query:  SEISFEEKPALPRTRNRPKREAEV
        S ISFEEKPALPRTRNRPKREAEV
Subjt:  SEISFEEKPALPRTRNRPKREAEV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G31560.1 high chlorophyll fluorescence 153

7.7e-15

39.85

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Query:  FPPLPVAPARAFFTSSNFSPAVR---------FSGDAPSPRALR--VVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIME
        F  +P+ P +  F +S+  P +           +G     R +R   V TRAG STS+++ AF+IP +LI  TV  ++KI D LD+ FLE++A+NQAI +
Subjt:  FPPLPVAPARAFFTSSNFSPAVR---------FSGDAPSPRALR--VVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIME

Query:  ADDENKDGSSEISFE---EKPALPRTRNRPKRE
        A ++ ++G  +IS +   ++P L RTRNRPKRE
Subjt:  ADDENKDGSSEISFE---EKPALPRTRNRPKRE

Sequences

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CDS sequence

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ATGTCAATTCCGATTGCTATGGCCAGCCTCCTTAAGACCCCAATATTCCCCTTCCCTCCTCTTCCCGTCGCTCCGGCACGGGCGTTCTTCACCTCCTCCAACTTCTCGCC
GGCGGTCAGATTCTCCGGCGACGCACCGTCGCCCAGAGCCCTACGCGTGGTGACGACTCGTGCCGGCGCCAGCACCAGCAACTTCATCTTCGCCTTCTCCATCCCTTTCT
CTCTTATTCTGGTCACTGTCCTCGCCGCTCTTAAAATCGGCGATGATCTCGACAAGAAATTTCTTGAGGAGCTTGCAATTAATCAAGCCATCATGGAGGCAGATGATGAG
AACAAAGATGGGAGTTCAGAAATATCTTTTGAAGAAAAACCAGCTCTTCCGCGAACTCGGAACCGCCCTAAAAGGGAAGCTGAGGTATGA

mRNA sequence

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AGAGCATCAAAATCTGTTCCACCCATTTAACAACTTCAAACCTTCAACAATGTCAATTCCGATTGCTATGGCCAGCCTCCTTAAGACCCCAATATTCCCCTTCCCTCCTC
TTCCCGTCGCTCCGGCACGGGCGTTCTTCACCTCCTCCAACTTCTCGCCGGCGGTCAGATTCTCCGGCGACGCACCGTCGCCCAGAGCCCTACGCGTGGTGACGACTCGT
GCCGGCGCCAGCACCAGCAACTTCATCTTCGCCTTCTCCATCCCTTTCTCTCTTATTCTGGTCACTGTCCTCGCCGCTCTTAAAATCGGCGATGATCTCGACAAGAAATT
TCTTGAGGAGCTTGCAATTAATCAAGCCATCATGGAGGCAGATGATGAGAACAAAGATGGGAGTTCAGAAATATCTTTTGAAGAAAAACCAGCTCTTCCGCGAACTCGGA
ACCGCCCTAAAAGGGAAGCTGAGGTATGAACAATTCCACAGATTTTTTTTGGAGGTGAACATGATCTGATCGGACGGCAGAGATCTTCCTCAAGGAACTAGGAAGCTTCC
ATTGTATATTGTATGTAATTTGTTTCTAATTTTTAATGATGATTAGTATGTAGTACTTAGTTTGTATGCTGAGTATATTTTTGTTGGATAATATTGTTATATATTCTTCA
AATTGAA

Protein sequence

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MSIPIAMASLLKTPIFPFPPLPVAPARAFFTSSNFSPAVRFSGDAPSPRALRVVTTRAGASTSNFIFAFSIPFSLILVTVLAALKIGDDLDKKFLEELAINQAIMEADDE
NKDGSSEISFEEKPALPRTRNRPKREAEV

Sed0015818 (gene) of Chayote v1 genome