CuGenDBv2

Gene ID	Sed0015845
Organism	Sechium edule (Chayote v1)
Description	Coiled-coil domain-containing protein 12
Genome location	LG08:38316719..38320934
RNA-Seq Expression	Sed0015845
Synteny	Sed0015845
Gene Ontology terms	GO:0005681 - spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572999.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-34

60.78

Show/hide

Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDS EQ+AA+R+ERLR+LRAAQ+L                                       ELQ GKLAPPVLPKFEDPVATEPPQLKE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQN TE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

XP_008437152.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]

2.4e-34

60.13

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Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDSFEQ+AA+RKERL++LRAAQ+L                                       ELQ GKLAPPVLPKFEDPV TEPPQ KE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]

2.4e-34

60.78

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Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDS EQ+AA+R+ERLR+LRAAQ+L                                       ELQ GKLAPPVLPKFEDPVATEPPQLKE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQN TE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]

1.1e-34

60.78

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Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDS EQ+AA+R+ERLR+LR AQ+L                                       ELQ GKLAPPVLPKFEDPVATEPPQLKE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQNGTE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

2.4e-34

60.78

Show/hide

Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDS EQ+AA+R+ERLR+LRAAQ+L                                       ELQ GKLAPPVLPKFEDPVATEPPQLKE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQN TE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3ATB1 coiled-coil domain-containing protein 12

1.2e-34

60.13

Show/hide

Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDSFEQ+AA+RKERL++LRAAQ+L                                       ELQ GKLAPPVLPKFEDPV TEPPQ KE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

A0A5D3BJ95 Coiled-coil domain-containing protein 12

1.2e-34

60.13

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Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDSFEQ+AA+RKERL++LRAAQ+L                                       ELQ GKLAPPVLPKFEDPV TEPPQ KE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X1

2.6e-34

60.78

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Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDS EQ+AA+RKERLR+LRAAQ+L                                       ELQ GKLAPPVLPKFEDPVA EPPQLKE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+D QNGTE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

1.2e-34

60.78

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Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDS EQ+AA+R+ERLR+LRAAQ+L                                       ELQ GKLAPPVLPKFEDPVATEPPQLKE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQN TE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

5.2e-35

60.78

Show/hide

Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN
        MATEEDS EQ+AA+R+ERLR+LR AQ+L                                       ELQ GKLAPPVLPKFEDPVATEPPQLKE+  VN
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF--------------------------------------ELQGGKLAPPVLPKFEDPVATEPPQLKEELLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM         AEG+DDQNGTE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM---------AEGEDDQNGTE

SwissProt top hits

e value

%identity

Alignment

P0CV38 Secreted RxLR effector protein 100

2.7e-04

51.28

Show/hide

Query:  EELLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        +E L+N+APK+ NWD+ RD+   L KLERRTQ A+ +++
Subjt:  EELLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

Q8R344 Coiled-coil domain-containing protein 12

2.6e-07

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Query:  EQIAASRKERLRSLRAAQDLFELQGGKLAPPVL----PKFEDPVATEPPQLKEELLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMAE---GEDD
        E++   R  RLR+     +  + +    A PV      K +   A   P ++E  L N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E   G++D
Subjt:  EQIAASRKERLRSLRAAQDLFELQGGKLAPPVL----PKFEDPVATEPPQLKEELLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMAE---GEDD

Q8WUD4 Coiled-coil domain-containing protein 12

3.4e-07

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Query:  ATEPPQLKEELLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMAE---GEDD
        A   P ++E  L N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E   G++D
Subjt:  ATEPPQLKEELLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMAE---GEDD

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

3.2e-29

54.74

Show/hide

Query:  MATEEDSFEQIAASRKERLRSLRAAQDLF----------------------------ELQGGKLAPPVLPKFEDPVATEPP--QLKEELLVNIAPKKPNW
        MA+E++S EQ AA+RKE L++LRAAQ+L                             ELQ GKLAPP LPKFEDP+   PP  + KE+  VNIAPKKPNW
Subjt:  MATEEDSFEQIAASRKERLRSLRAAQDLF----------------------------ELQGGKLAPPVLPKFEDPVATEPP--QLKEELLVNIAPKKPNW

Query:  DLRRDVQKKLDKLERRTQKALYKLMAEGEDDQNGTEA
        DLRRDVQKKLDKLERRTQKA++KLM E E ++   EA
Subjt:  DLRRDVQKKLDKLERRTQKALYKLMAEGEDDQNGTEA

Sequences

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CDS sequence

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ATGCATAAATGTTCACGGTTTTTGGCTTTACCTTTCATCACATTTTATTTGATTTTCAGTTCTTCTATTATCAGGTGTTTTTACGAACAATCGGCAATGGCTACGGAAGA
GGATTCTTTCGAACAAATTGCTGCATCGCGTAAAGAGAGATTGAGATCTCTAAGAGCTGCTCAGGATTTGTTTGAGCTTCAGGGCGGTAAGCTTGCCCCACCTGTATTAC
CAAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGAGCTGCTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTCAGAAGGGATGTGCAGAAG
AAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGCTGAAGGAGAAGATGACCAAAATGGCACAGAAGCATAA

mRNA sequence

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Protein sequence

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MHKCSRFLALPFITFYLIFSSSIIRCFYEQSAMATEEDSFEQIAASRKERLRSLRAAQDLFELQGGKLAPPVLPKFEDPVATEPPQLKEELLVNIAPKKPNWDLRRDVQK
KLDKLERRTQKALYKLMAEGEDDQNGTEA

Sed0015845 (gene) of Chayote v1 genome