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Sed0015860 (gene) of Chayote v1 genome

Gene IDSed0015860
OrganismSechium edule (Chayote v1)
Descriptionextensin-like
Genome locationLG11:29174087..29180704
RNA-Seq ExpressionSed0015860
SyntenySed0015860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058957.1 hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa]2.1e-0448.25Show/hide
Query:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPW
        MGF   LASY+FSLLI AF  L+LP+KLTA+YI  SS   + N YGY       PP+   P  PPPP  +   PPP    N+ K    L       +  W
Subjt:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPW

Query:  PKRFTPKSSPPPPF
        P+RFTPK SPPPPF
Subjt:  PKRFTPKSSPPPPF

KAG6602173.1 hypothetical protein SDJN03_07406, partial [Cucurbita argyrosperma subsp. sororia]4.7e-0446.43Show/hide
Query:  MILASYVFSLLIFAFVLLDLPSKL--TANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPWPK
        ++LAS++ SLLI   + L LPS+L   A+Y IH        PY YQ      PP   PP  PPPP +KLS PP  P   +YK +S L+ +R   I+PWP+
Subjt:  MILASYVFSLLIFAFVLLDLPSKL--TANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPWPK

Query:  RFTPKSSPPPPF
        R T K SPPPPF
Subjt:  RFTPKSSPPPPF

XP_022939147.1 extensin-like [Cucurbita moschata]1.1e-0545.16Show/hide
Query:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPL----------PANNRYKSKSQLR
        MG +++ + Y+FSLLI A + LDLPSKL A   +H SP    NP+ YQ      PP   PPPLPP PSKKL YPPP           P  NR+K K+   
Subjt:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPL----------PANNRYKSKSQLR

Query:  WQRKWNIKPWPKRFTPKSSPPPPF
              + PW ++FT  +SPPPPF
Subjt:  WQRKWNIKPWPKRFTPKSSPPPPF

XP_023551507.1 extensin-3-like [Cucurbita pepo subsp. pepo]5.5e-0546.34Show/hide
Query:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPL---------PANNRYKSKSQLRW
        MG +++ + Y+FSLLI A + LDLPSKL A   +H SP    NP+ YQ      PP   PPPLPP PSKKL YPPP          P  NR+K K     
Subjt:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPL---------PANNRYKSKSQLRW

Query:  QRKWNIKPWPKRFTPKSSPPPPF
            +  PW ++FT K SPPPPF
Subjt:  QRKWNIKPWPKRFTPKSSPPPPF

TrEMBL top hitse value%identityAlignment
A0A0A0KI69 Uncharacterized protein1.2e-0550.88Show/hide
Query:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPW
        MGF   LASY+FSLLI AF  L+LPSKLTA+YI  SS   + N Y Y      PPP+   P LPPPP  +   PPP    N+ K    L        K W
Subjt:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPW

Query:  PKRFTPKSSPPPPF
        P+RFTPK SPPPPF
Subjt:  PKRFTPKSSPPPPF

A0A5A7UW72 Uncharacterized protein1.0e-0448.25Show/hide
Query:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPW
        MGF   LASY+FSLLI AF  L+LP+KLTA+YI  SS   + N YGY       PP+   P  PPPP  +   PPP    N+ K    L       +  W
Subjt:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPW

Query:  PKRFTPKSSPPPPF
        P+RFTPK SPPPPF
Subjt:  PKRFTPKSSPPPPF

A0A6J1FFZ9 extensin-like5.4e-0645.16Show/hide
Query:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPL----------PANNRYKSKSQLR
        MG +++ + Y+FSLLI A + LDLPSKL A   +H SP    NP+ YQ      PP   PPPLPP PSKKL YPPP           P  NR+K K+   
Subjt:  MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPL----------PANNRYKSKSQLR

Query:  WQRKWNIKPWPKRFTPKSSPPPPF
              + PW ++FT  +SPPPPF
Subjt:  WQRKWNIKPWPKRFTPKSSPPPPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTGTAATGATATTAGCTTCCTATGTTTTCTCCCTTTTGATCTTTGCATTTGTCCTCTTAGATTTGCCTTCAAAATTAACTGCAAACTACATTATTCACTCATC
TCCATTATTCACCAACAACCCTTATGGATATCAACATCAACCTCGTCGGCCGCCACCAATATGGTCACCACCACCACTGCCGCCACCGCCATCTAAGAAACTCTCATATC
CTCCTCCACTGCCGGCCAACAACAGATACAAATCAAAGTCACAGCTGCGGTGGCAGCGAAAATGGAATATAAAGCCATGGCCAAAGAGATTTACACCTAAATCTTCTCCA
CCGCCGCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
TTGTCATTAAAACAGCAAGAAAAAAATGAAGTTTGGAATGGGTTGTGTTTTATGTGCATTAATGTTGTCTTTCAGTTTATCATATCTCCCCTCAACATTTGCAACTCAGC
CTCACCCTCTCCCTTCTCTTCACCACACCAAAATTGTTTTGCCACAACATCATCAACATCATCGACATCGCCGGCCACCGCCACGGTGGGAACCATGGCCACCAATTTTT
ACTCAGCACTCGCCTCCACCTCCTTTCTAATTAGATTTAGTACAAGTGGCATCATTAAGTTTGGGTGTATAAAAGGCATTAGCTAAAACAAAAATATTGGCATTAGAAAA
AGAAGAATGGGGTTTGTAATGATATTAGCTTCCTATGTTTTCTCCCTTTTGATCTTTGCATTTGTCCTCTTAGATTTGCCTTCAAAATTAACTGCAAACTACATTATTCA
CTCATCTCCATTATTCACCAACAACCCTTATGGATATCAACATCAACCTCGTCGGCCGCCACCAATATGGTCACCACCACCACTGCCGCCACCGCCATCTAAGAAACTCT
CATATCCTCCTCCACTGCCGGCCAACAACAGATACAAATCAAAGTCACAGCTGCGGTGGCAGCGAAAATGGAATATAAAGCCATGGCCAAAGAGATTTACACCTAAATCT
TCTCCACCGCCGCCTTTCTAA
Protein sequenceShow/hide protein sequence
MGFVMILASYVFSLLIFAFVLLDLPSKLTANYIIHSSPLFTNNPYGYQHQPRRPPPIWSPPPLPPPPSKKLSYPPPLPANNRYKSKSQLRWQRKWNIKPWPKRFTPKSSP
PPPF