; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0015876 (gene) of Chayote v1 genome

Gene IDSed0015876
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L28
Genome locationLG12:2733895..2736000
RNA-Seq ExpressionSed0015876
SyntenySed0015876
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018806.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-5882.43Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA   +LG +PV +SGVM+ SS+KLHFR+KA  ELGFL+SQLSG+KISSN+ L S +P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022145908.1 50S ribosomal protein L28, chloroplastic [Momordica charantia]1.2e-6085.81Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAA V+LGLSP NTSGVM+ SST+LHFRTK  SELGFLTSQL G+KISSNN      P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022924246.1 50S ribosomal protein L28, chloroplastic [Cucurbita moschata]1.5e-5882.43Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA   +LG +PV +SGVM+ SS+KLHFR+KA  ELGFL+SQLSG+KISSN+ L S +P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]7.8e-6083.11Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA   +LG +PV++SGVM+ SS+KLHFRTK   ELGFL+SQLSG+KISSN+ L SP+P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]1.2e-6084.46Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAAFV+LG +P  +SGVM+ SSTKL F TK  SELGFLTSQL+G+KISSN+ L SP+P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A1S3AWK5 50S ribosomal protein L28, chloroplastic1.0e-5782.67Show/hide
Query:  MAAFVMLGLSPVNTS-GVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFY-APLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAA V+ G +P  TS GVM+ SSTKLHFRTK  S+LGFL SQLSG+KISSN+ L SP+P   APLRP+L PIARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAAFVMLGLSPVNTS-GVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFY-APLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L281.0e-5782.67Show/hide
Query:  MAAFVMLGLSPVNTS-GVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFY-APLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAA V+ G +P  TS GVM+ SSTKLHFRTK  S+LGFL SQLSG+KISSN+ L SP+P   APLRP+L PIARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAAFVMLGLSPVNTS-GVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFY-APLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1CX73 50S ribosomal protein L28, chloroplastic5.8e-6185.81Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAA V+LGLSP NTSGVM+ SST+LHFRTK  SELGFLTSQL G+KISSNN      P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic7.1e-5982.43Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA   +LG +PV +SGVM+ SS+KLHFR+KA  ELGFL+SQLSG+KISSN+ L S +P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic3.8e-6083.11Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA   +LG +PV++SGVM+ SS+KLHFRTK   ELGFL+SQLSG+KISSN+ L SP+P  APLRPAL P+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B1XIH9 50S ribosomal protein L285.7e-2165.33Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R C  TGKKAN    VS S+ +TKKLQ VNLQ+K+VWW  GNRFV+LRLSTKA+KT+EK G+DA+A++AGI+L K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic1.1e-4067.91Show/hide
Query:  MSPSSTKLHFRTKATSELGFLTSQLSGLKIS---SNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGN
        M+ S+  +   T  + ELGFLTSQLSGL+IS   S+ +     P +  ++P    +ARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAG 
Subjt:  MSPSSTKLHFRTKATSELGFLTSQLSGLKIS---SNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGN

Query:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic1.3e-4471.9Show/hide
Query:  RTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGNRFVKLRLSTKALK
        ++K +SEL F+TSQLSGLKISS + ++S  P   P +P+L P+ARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAG R+VKLRLSTKA+K
Subjt:  RTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGNRFVKLRLSTKALK

Query:  TIEKNGLDAVAKKAGIDLRKE
        TIEKNGLDAVAKKAGIDL K+
Subjt:  TIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic2.8e-4469.33Show/hide
Query:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKAT-SELGFLTSQLSGLKISSNNLL-TSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAA  ML  +P N        S  L  + KAT SELGFLTSQLSG++IS + L      P  APL+P+L P+ARR+CPFTGKK+NK N VS SNHKTK+L
Subjt:  MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKAT-SELGFLTSQLSGLKISSNNLL-TSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYK+VWWEAG RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L286.3e-2062.67Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  G R+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family7.8e-4267.91Show/hide
Query:  MSPSSTKLHFRTKATSELGFLTSQLSGLKIS---SNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGN
        M+ S+  +   T  + ELGFLTSQLSGL+IS   S+ +     P +  ++P    +ARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAG 
Subjt:  MSPSSTKLHFRTKATSELGFLTSQLSGLKIS---SNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGN

Query:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTTCGTTATGTTAGGATTGTCGCCGGTGAATACTTCCGGCGTCATGTCACCGTCGTCGACGAAGCTTCACTTCAGAACTAAAGCCACTTCCGAGCTAGGGTT
TCTCACTTCCCAATTGAGTGGCCTCAAAATCTCCTCCAACAATTTGCTCACCTCGCCCACTCCCTTTTACGCGCCTCTCAGACCTGCGCTTCTTCCCATTGCTCGTAGAG
TTTGCCCCTTTACTGGGAAGAAAGCAAATAAGAAAAATTTGGTTTCATTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGG
GAAGCTGGGAATCGTTTTGTGAAACTACGCTTGTCAACAAAGGCTTTAAAGACCATCGAGAAAAATGGACTCGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGCAA
GGAATGA
mRNA sequenceShow/hide mRNA sequence
AGAGGCTTACAAATTACAAGATAAGGATTAGAGGAAGCTCTGCTCAGAAACAATGGCAGCTTTCGTTATGTTAGGATTGTCGCCGGTGAATACTTCCGGCGTCATGTCAC
CGTCGTCGACGAAGCTTCACTTCAGAACTAAAGCCACTTCCGAGCTAGGGTTTCTCACTTCCCAATTGAGTGGCCTCAAAATCTCCTCCAACAATTTGCTCACCTCGCCC
ACTCCCTTTTACGCGCCTCTCAGACCTGCGCTTCTTCCCATTGCTCGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAATAAGAAAAATTTGGTTTCATTCTCCAACCA
CAAGACCAAGAAGTTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAATCGTTTTGTGAAACTACGCTTGTCAACAAAGGCTTTAAAGACCATCG
AGAAAAATGGACTCGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGCAAGGAATGATATGGTAATTCATGACACTCTTTAAATTTAATCTTAGAACTTGAGGAAGAT
CTGTTTGCTAATTACAAAATCATATTAGATTTATGATCTTCTTGTTAGTAACCTGTTAGCGATGAAGCTGGAATCCATCTCTTTTTCTTTCTAGGTTTTATGAGAATCAC
AAAGAGGGAAGCGAATATTCTCTGATAATAGTTGAGGTCTGCATAAGCTGACTCAGACAATCATAGATATCAAAAAGAAAAGAGAAAAGGAGAGTTAGTGGAAATAGGGA
GAGAGAGAGCAGGTGAAACGTGTCGTCTGTCACAATGGGAGCAGGCGTAACGTGTTGTTTTTCGTAATGGTGTTGTTTGTTATCTTTGACCAAGACTAGAAACCAATTCA
AATTTGGATCTTGATATATGTCTGTGTGGCATCTTGCCGGGAAGCCTCCCTACACTGAAGAAAAAACCAAGTCATTTGGAAGCCTGGGTTAGCTTCAAATCTATCTCTAA
TGATGTGCAAAACCAGCAAATGCAAGCTATGAGAAACCAAGTATTAAGAACACCATTAGAGATGTCAATGGCACGGGTTGGGGAATGACTTTTACATCACTGTCACCAAA
ATCAATTCTCATTCCTGCAAAATTTAACATTTTTTATTGATATCGAGAGGGAATTCCCTGCATATAATTGGTCGGAATTGAGTTCCTTGTGGGGAACTTTTCCCTTTGTT
TTTTTTTTCTCTTTTTGTAATCTTAATTTTATAAGCATTTTTTAGTG
Protein sequenceShow/hide protein sequence
MAAFVMLGLSPVNTSGVMSPSSTKLHFRTKATSELGFLTSQLSGLKISSNNLLTSPTPFYAPLRPALLPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWW
EAGNRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE