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Sed0015891 (gene) of Chayote v1 genome

Gene IDSed0015891
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan protein 23
Genome locationLG14:2129060..2129670
RNA-Seq ExpressionSed0015891
SyntenySed0015891
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]5.7e-1275Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAYC
        MEMK FA   F+ V ASL+MVLA++EA +PAPGPSS  SATLPVVGTLLGASA SLIAYC
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAYC
KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]1.1e-1078.18Show/hide
Query:  FAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAYC
        FA   F+ VAASL+MVLA++EA +PAPGPSS+ASATLPVVGTLLGASA SLIAYC
Subjt:  FAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAYC
OVA12266.1 hypothetical protein BVC80_1779g40 [Macleaya cordata]7.9e-0654.24Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        M+MKK +    + VAAS+N  LAA+EA APAPGP+S+A  T+PV+G+L+GAS  S  A+
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]4.2e-0764.41Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        ME+KK + T  ++ AASL+ V+AANE  APAPGPSS ASATLPVVG+L+GAS  S  AY
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]7.2e-0762.71Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        ME+KK ++   ++ AASL+ V+AANE  APAPGPSS ASATLPVVG+L+GAS  S  AY
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
TrEMBL top hitse value%identityAlignment
A0A200QP69 Uncharacterized protein3.8e-0654.24Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        M+MKK +    + VAAS+N  LAA+EA APAPGP+S+A  T+PV+G+L+GAS  S  A+
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
A0A2P5CAP7 Uncharacterized protein2.0e-0764.41Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        ME+KK + T  ++ AASL+ V+AANE  APAPGPSS ASATLPVVG+L+GAS  S  AY
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
A0A2P5F1L3 Uncharacterized protein3.5e-0762.71Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        ME+KK ++   ++ AASL+ V+AANE  APAPGPSS ASATLPVVG+L+GAS  S  AY
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
A0A5D3E271 Arabinogalactan peptide 23-like2.7e-1275Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAYC
        MEMK FA   F+ V ASL+MVLA++EA +PAPGPSS  SATLPVVGTLLGASA SLIAYC
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAYC
A0A6A5N125 Uncharacterized protein5.0e-0662.07Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIA
        MEMKK A    +I AAS++  +AA E PAPAPGPS+SASATLP+VG+L+GAS  S  A
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIA
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 239.7e-0755.93Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        MEMKK A    +  AAS+  V+AA E  APAPGP+S+ASA LP +G+L+GAS  SL +Y
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)7.2e-0555Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSS-ASATLPVVGTLLGASATSLIAY
        MEMKK A    V  AAS+  V+AA E  APAPGP++S AS  +P +G+L+GAS  SL AY
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSS-ASATLPVVGTLLGASATSLIAY
AT3G57690.1 arabinogalactan protein 236.9e-0855.93Show/hide
Query:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY
        MEMKK A    +  AAS+  V+AA E  APAPGP+S+ASA LP +G+L+GAS  SL +Y
Subjt:  MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTCGCTGTCACCACCTTCGTCATCGTTGCTGCCTCCTTGAACATGGTTTTGGCTGCAAACGAAGCGCCGGCCCCAGCACCCGGCCCGTCCAGCAG
CGCCTCCGCTACCTTGCCCGTTGTCGGGACATTGCTAGGTGCATCAGCTACCTCTCTCATTGCCTACTGCTTTGCCTGA
mRNA sequenceShow/hide mRNA sequence
CTTTCTTCACTATCTTCATCTTCTTCAGATCTGCATTCCATTACTCATCAACAAAAGAAAAAAAAAACCCAAAAAAAAACAAAAAAAAAACAAAAAAGAAACCAAAAAAA
GGGAACCTTCCTCTCCATCCCAAGCAGGTCTCTTTCTTTAACATCTTTTCTACCCCCTCCTTTTCTATCACCATGGAAATGAAGAAGTTCGCTGTCACCACCTTCGTCAT
CGTTGCTGCCTCCTTGAACATGGTTTTGGCTGCAAACGAAGCGCCGGCCCCAGCACCCGGCCCGTCCAGCAGCGCCTCCGCTACCTTGCCCGTTGTCGGGACATTGCTAG
GTGCATCAGCTACCTCTCTCATTGCCTACTGCTTTGCCTGAGTTCAGCCGTTTGAGGGAGGGGGATAATAAATCAATGTGGGGTGTAATTCTTTTCCATTTTCCATCTTC
TTGATGGTATTGTTTTTCTTTTTATTTTATTTTTTCATTTTTGCTCTGTCTTTGGAGTTTTGGTTTGTTTTTGGATACATGGTTGTAATATAATAAATCCCTTTCCAGTT
TTTGAGTTTGTAAGCACCAAAAACCACTTTGAATGAAATGAAAATTATGATGCTTTGTCAA
Protein sequenceShow/hide protein sequence
MEMKKFAVTTFVIVAASLNMVLAANEAPAPAPGPSSSASATLPVVGTLLGASATSLIAYCFA