CuGenDBv2

Gene ID	Sed0015899
Organism	Sechium edule (Chayote v1)
Description	photosystem II reaction center protein H
Genome location	Contig00297:30978..31265
RNA-Seq Expression	Sed0015899
Synteny	Sed0015899
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0050821 - protein stabilization (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0042301 - phosphate ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ALO21758.1 PsbH [Cucurbita argyrosperma]

7.8e-29

95.89

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PRRTIVG LLKPLNSEYGKVAPGWGTTPLMGVAMGLF IFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

YP_009317415.1 photosystem II protein H [Coccinia grandis]

6.0e-29

95.89

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTV+DSSRS PRRTIVG LLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

YP_009447479.1 photosystem II protein H [Cucurbita maxima]

2.7e-29

97.26

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PRRTIVG LLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

YP_009753118.1 photosystem II subunit H [Corallocarpus boehmii]

2.1e-29

97.26

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PRRTIVG+LLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

YP_009945446.1 photosystem II phosphoprotein [Sechium edule]

3.2e-30

100

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

TrEMBL top hits

e value

%identity

Alignment

A0A346QN61 Photosystem II reaction center protein H

1.3e-29

97.26

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PRRTIVG LLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

A0A410HFB6 Photosystem II reaction center protein H

1.3e-29

97.26

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PRRTIVG LLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

A0A6H0EP87 Photosystem II reaction center protein H

1.5e-30

100

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

A0A6H0EW06 Photosystem II reaction center protein H

1.0e-29

97.26

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PRRTIVG+LLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

A0A6M3RU29 Photosystem II reaction center protein H

1.3e-29

97.26

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PRRTIVG LLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

SwissProt top hits

e value

%identity

Alignment

A0A364 Photosystem II reaction center protein H

1.3e-29

89.04

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTV++SSRS PRRT VGSLLKPLNSEYGKVAPGWGTTPLMGVAM LFA+FLSIILEIYNSS+LLDGIS N
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

Q2PMQ6 Photosystem II reaction center protein H

1.9e-30

91.78

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVED+SRS PRRT+VG LLKPLNSEYGKVAPGWGTTPLMGVAM LFAIFLSIILEIYNSSILLDGIS N
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

Q49KW9 Photosystem II reaction center protein H

7.4e-30

90.41

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVE SSRS PRRTIVG LLKPLNSEYGKVAPGWGTTPLMGVAM LFA+FLSIILEIYNSS+LLDGIS N
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

Q4VZI9 Photosystem II reaction center protein H

4.3e-30

90.41

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTV+DSS+S PRRT+VG LLKPLNSEYGKVAPGWGTTPLMGVAM LFAIFL IILEIYNSSILLDGISSN
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

Q9BBQ7 Photosystem II reaction center protein H

1.3e-29

90.41

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSR+ PR+T VGSLLKPLNSEYGKVAPGWGTTPLMG+AM LFAIFLSIILEIYNSSILLDGIS N
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00710.1 photosystem II reaction center protein H

2.0e-30

89.04

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Query:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN
        MATQTVEDSSRS PR T VG LLKPLNSEYGKVAPGWGTTPLMGVAM LFA+FLSIILEIYNSS+LLDGIS N
Subjt:  MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

Sequences

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CDS sequence

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ATGGCTACACAAACCGTTGAGGATAGTTCTCGATCTGCGCCAAGACGAACTATTGTAGGGAGTTTATTGAAACCATTGAATTCAGAATATGGTAAAGTGGCTCCTGGGTG
GGGAACTACGCCTTTGATGGGTGTCGCGATGGGTCTATTTGCGATATTCCTATCTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATT
AG

mRNA sequence

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ATTTACAACGGAATGGTATACAAAGTCAACAGATCTTACTGAATAAAAAAAAATATAGGATTATTTATGGCTACACAAACCGTTGAGGATAGTTCTCGATCTGCGCCAAG
ACGAACTATTGTAGGGAGTTTATTGAAACCATTGAATTCAGAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACGCCTTTGATGGGTGTCGCGATGGGTCTATTTGCGA
TATTCCTATCTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATTAG

Protein sequence

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MATQTVEDSSRSAPRRTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLSIILEIYNSSILLDGISSN

Sed0015899 (gene) of Chayote v1 genome