CuGenDBv2

Gene ID	Sed0015902
Organism	Sechium edule (Chayote v1)
Description	Photosystem I assembly protein Ycf3
Genome location	Contig00297:150512..151632
RNA-Seq Expression	Sed0015902
Synteny	Sed0015902
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001440 - Tetratricopeptide repeat 1 IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat

Homology

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GenBank top hits

e value

%identity

Alignment

QBK38380.1 photosystem I assembly protein Ycf3 [Stewartia pseudocamellia]

1.0e-46

81.51

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIPTGRTGHSTGDSEIAEAWFNQAAEYWKQAIAL
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRAL + P   +LP   G      GDSEIAEAWF+QAAEYWKQAIAL
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIPTGRTGHSTGDSEIAEAWFNQAAEYWKQAIAL

Query:  TPANYIEAQNWLKITRRFK
        TP NYIEA NWLKITRRF+
Subjt:  TPANYIEAQNWLKITRRFK

QJD26297.1 Ycf3 [Trichosanthes kirilowii]

8.0e-47

77.95

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P          +      G      GDSEIAEAWFNQAAE
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE

Query:  YWKQAIALTPANYIEAQNWLKITRRFK
        YWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  YWKQAIALTPANYIEAQNWLKITRRFK

YP_009447451.1 photosystem I assembly protein Ycf3 [Cucurbita maxima]

1.4e-46

78.29

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P   +LP             G      GDSEIAEAWFNQA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

YP_009525187.1 photosystem I assembly protein Ycf3 [Hodgsonia macrocarpa]

1.4e-46

78.29

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P   +LP             G      GDSEIAEAWFNQA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

YP_009945418.1 photosystem I assembly protein Ycf3 [Sechium edule]

1.6e-47

79.84

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRAL + P   +LP             G      GDSEIAEAWFNQA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTPANYIEAQNWLKITRRFK
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

TrEMBL top hits

e value

%identity

Alignment

A0A6H0ER18 Photosystem I assembly protein Ycf3

7.8e-48

79.84

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRAL + P   +LP             G      GDSEIAEAWFNQA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTPANYIEAQNWLKITRRFK
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

A0A6M3RU95 Photosystem I assembly protein Ycf3

3.9e-47

77.95

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P          +      G      GDSEIAEAWFNQAAE
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE

Query:  YWKQAIALTPANYIEAQNWLKITRRFK
        YWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  YWKQAIALTPANYIEAQNWLKITRRFK

A0A6M3RWP8 Photosystem I assembly protein Ycf3

3.9e-47

77.95

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P          +      G      GDSEIAEAWFNQAAE
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE

Query:  YWKQAIALTPANYIEAQNWLKITRRFK
        YWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  YWKQAIALTPANYIEAQNWLKITRRFK

A0A6M3S6C6 Photosystem I assembly protein Ycf3

3.9e-47

77.95

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P          +      G      GDSEIAEAWFNQAAE
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE

Query:  YWKQAIALTPANYIEAQNWLKITRRFK
        YWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  YWKQAIALTPANYIEAQNWLKITRRFK

A0A7D4XNM0 Photosystem I assembly protein Ycf3

3.9e-47

77.95

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P          +      G      GDSEIAEAWFNQAAE
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKP--------EGIYLPIPTGRTGHSTGDSEIAEAWFNQAAE

Query:  YWKQAIALTPANYIEAQNWLKITRRFK
        YWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  YWKQAIALTPANYIEAQNWLKITRRFK

SwissProt top hits

e value

%identity

Alignment

A0ZZ36 Photosystem I assembly protein Ycf3

9.8e-48

75.97

Show/hide

Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRAL + P   +LP             G      GDSEIAEAWF+QA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

Q2L906 Photosystem I assembly protein Ycf3

9.8e-48

75.97

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRAL + P   +LP             G      GDSEIAEAWF+QA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

Q49KZ7 Photosystem I assembly protein Ycf3

9.8e-48

75.97

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRAL + P   +LP             G      GDSEIAEAWF+QA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

Q4VZH4 Photosystem I assembly protein Ycf3

1.8e-49

78.29

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRAL + P   +LP             G      GDSEIAEAWFNQA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

Q9MTP0 Photosystem I assembly protein Ycf3

9.8e-48

75.97

Show/hide

Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRAL + P   +LP             G      GDSEIAEAWF+QA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.8e-47

73.64

Show/hide

Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRAL + P   +LP             G      GDSE+AEAWF QA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIP----------TGRTGHSTGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAI LTP NYIEAQNWL ITRRF+
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

Sequences

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CDS sequence

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ATGTCAGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGG
TCTTATCCACACAAGGAACGGAGAACATACGAAAGCTTTGAAATATTATTTTCGGGCACTAGGGCAGAAACCCGAAGGAATTTACCTGCCTATTCCGACCGGGAGAACAG
GCCATTCGACAGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGCTAATTATATTGAAGCACAAAAT
TGGTTGAAGATCACAAGGCGCTTCAAATAA

mRNA sequence

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Protein sequence

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MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALGQKPEGIYLPIPTGRTGHSTGDSEIAEAWFNQAAEYWKQAIALTPANYIEAQN
WLKITRRFK

Sed0015902 (gene) of Chayote v1 genome