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Sed0015979 (gene) of Chayote v1 genome

Gene IDSed0015979
OrganismSechium edule (Chayote v1)
DescriptionAt1g52565
Genome locationLG06:45032280..45034660
RNA-Seq ExpressionSed0015979
SyntenySed0015979
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022948685.1 uncharacterized protein LOC111452283 isoform X1 [Cucurbita moschata]1.5e-3874.45Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQR--
        MSSILSSQGL IATAMV SSTALFLAFSKH+KI P  SKS +L SCL SSDDKK+EK     KKK K+VRFAEDVKEP+GNGEEYRK+H+EKMAMA+R  
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQR--

Query:  ---TSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
           ++TT +C+NQ PAN+LALYNGILKQRSQ+IQCSF
Subjt:  ---TSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
XP_022955913.1 uncharacterized protein LOC111457756 [Cucurbita moschata]6.5e-3973.23Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTNNC
        MSSIL+SQGL IATAMV SSTALFLAFSKH+KINP+ SKS +L SC  S +  KK+KKKKKK+VRFAEDVKEPKGNGEEYR++H+E++AMA+R ++++ C
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTNNC

Query:  RNQIPANRLALYNGILKQRSQKIQCSF
        RN+IPANR+ALYNGILKQRS + QCSF
Subjt:  RNQIPANRLALYNGILKQRSQKIQCSF
XP_022998622.1 uncharacterized protein LOC111493207 [Cucurbita maxima]6.5e-3975.56Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQ---
        MSSILSSQGL IATAMV SSTALFLAFSKH+KI P  SKS +L SCL SSDDKK+EK     KKK K+VRFAEDVKEP+GNGEEYRK+H+EK+AMA+   
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQ---

Query:  RTSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
        RT+TT +C+NQ PAN+LALYNGILKQRSQ+IQCSF
Subjt:  RTSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
XP_023525383.1 uncharacterized protein LOC111789004 [Cucurbita pepo subsp. pepo]1.1e-3874.45Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQR--
        MSSILSSQGL IATAMV SSTALFLAFSKH+KI P  SKS +L SCL SSDDKK+EK     KKK K+VRFAEDVKEP+GNGEEYRK+H+EKMA+A+R  
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQR--

Query:  ---TSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
           T+TT +C+NQ PAN+LALYNGILKQRSQ+IQCSF
Subjt:  ---TSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
XP_038901306.1 uncharacterized protein LOC120088227 [Benincasa hispida]3.8e-3974.44Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKK---KKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTST-
        MSSILSSQGL IATAMV SSTALFLAFS H+KINPI+   ++L SC  SSD+KKKEKKK   KKK+VRFAEDVKEPKGNGEEYR++H+EKM M +R  T 
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKK---KKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTST-

Query:  --TNNCRNQIPANRLALYNGILKQRSQKIQCSF
          T+NCRN+IPANR+ALYNGILK RSQ+IQCSF
Subjt:  --TNNCRNQIPANRLALYNGILKQRSQKIQCSF
TrEMBL top hitse value%identityAlignment
A0A1S3BY99 uncharacterized protein LOC1034947033.4e-3368.7Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHN--KINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTN
        MSSILSSQGL IATAMV SSTALFLAFS H+   I+PI+  ST L     SSD+KKK+KKKKK  VRFAEDVKEPKGNGEEYR++H+EK+ + + T    
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHN--KINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTN

Query:  --NCRNQIPANRLALYNGILKQRSQKIQCSF
          +CRN IPANR+ALYNGILK RSQ+IQCSF
Subjt:  --NCRNQIPANRLALYNGILKQRSQKIQCSF
A0A6J1GAK8 uncharacterized protein LOC111452283 isoform X17.0e-3974.45Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQR--
        MSSILSSQGL IATAMV SSTALFLAFSKH+KI P  SKS +L SCL SSDDKK+EK     KKK K+VRFAEDVKEP+GNGEEYRK+H+EKMAMA+R  
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQR--

Query:  ---TSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
           ++TT +C+NQ PAN+LALYNGILKQRSQ+IQCSF
Subjt:  ---TSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
A0A6J1GVB7 uncharacterized protein LOC1114577563.2e-3973.23Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTNNC
        MSSIL+SQGL IATAMV SSTALFLAFSKH+KINP+ SKS +L SC  S +  KK+KKKKKK+VRFAEDVKEPKGNGEEYR++H+E++AMA+R ++++ C
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTNNC

Query:  RNQIPANRLALYNGILKQRSQKIQCSF
        RN+IPANR+ALYNGILKQRS + QCSF
Subjt:  RNQIPANRLALYNGILKQRSQKIQCSF
A0A6J1IWF1 uncharacterized protein LOC1114791845.0e-3771.54Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTNN-
        MSSIL+SQGL IATAMV SSTALFLAFSKH+KINP+ SK+ +L SC   S DK+K+KKKKKK+VRFAEDVKEPKGNGEEYR++H+E++ MA+R  TT + 
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTNN-

Query:  --CRNQIPANRLALYNGILKQRSQKIQCSF
          CRN+IPANR+ALYNG+LKQRS + QCSF
Subjt:  --CRNQIPANRLALYNGILKQRSQKIQCSF
A0A6J1K8H4 uncharacterized protein LOC1114932073.2e-3975.56Show/hide
Query:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQ---
        MSSILSSQGL IATAMV SSTALFLAFSKH+KI P  SKS +L SCL SSDDKK+EK     KKK K+VRFAEDVKEP+GNGEEYRK+H+EK+AMA+   
Subjt:  MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEK-----KKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQ---

Query:  RTSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
        RT+TT +C+NQ PAN+LALYNGILKQRSQ+IQCSF
Subjt:  RTSTTNNCRNQIPANRLALYNGILKQRSQKIQCSF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52565.1 unknown protein8.0e-2758.02Show/hide
Query:  MSSILS-SQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMA---MAQRTST
        M+ ILS S G+ IATAMVFSSTALFLA S+    N   S   IL SCL SS++KKK++K KKK+V+FAE+VKE KGNGEEYRKK   ++    M +   T
Subjt:  MSSILS-SQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMA---MAQRTST

Query:  TNNCRNQIPANRLALYNGILKQRSQKIQCSF
         + CRN +PANR+ALYNGIL+ R  +IQCS+
Subjt:  TNNCRNQIPANRLALYNGILKQRSQKIQCSF
AT3G15760.1 unknown protein4.4e-1746.62Show/hide
Query:  SSQGLAIATAMVFSSTALFLAFSKH---NKINPILSKST---ILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTS----
        S+  + IATAMV SSTALFLA ++    N  NP +   T   IL SCL S + KK+ KK KK  VRFA++VK+ KGNGEEYR++   + ++ +  +    
Subjt:  SSQGLAIATAMVFSSTALFLAFSKH---NKINPILSKST---ILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTS----

Query:  TTNNCR-NQIPANRLALYNGILKQRSQKIQCSF
        T + CR + +PANR+ALYNGIL+ R  ++Q S+
Subjt:  TTNNCR-NQIPANRLALYNGILKQRSQKIQCSF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCATTTTGAGCTCTCAAGGTCTGGCCATTGCCACTGCCATGGTCTTCTCTTCCACTGCTCTGTTTCTTGCCTTTTCCAAACACAACAAGATCAATCCAATTCT
CTCCAAATCAACCATTTTACATTCTTGCTTAATATCTTCTGATGATAAAAAGAAAGAGAAGAAGAAGAAGAAGAAAAGGGTGAGATTTGCAGAGGATGTGAAAGAGCCAA
AAGGAAATGGAGAAGAGTACAGAAAAAAGCACAATGAGAAGATGGCTATGGCTCAAAGAACATCAACAACAAATAATTGTAGAAATCAAATTCCTGCAAATCGACTTGCT
TTGTACAATGGAATTCTCAAACAACGATCCCAAAAGATTCAATGTTCATTTTAG
mRNA sequenceShow/hide mRNA sequence
TTGAAATCTCAAATATCTCCCTCTCCCACTTGCCACCAAACTCCTCCATCCATTTTCTTCAATTTGTCAAAATTCAAAACAAAAACAAAAACAAAACTTTGGTCAGCCAT
GTCTTCCATTTTGAGCTCTCAAGGTCTGGCCATTGCCACTGCCATGGTCTTCTCTTCCACTGCTCTGTTTCTTGCCTTTTCCAAACACAACAAGATCAATCCAATTCTCT
CCAAATCAACCATTTTACATTCTTGCTTAATATCTTCTGATGATAAAAAGAAAGAGAAGAAGAAGAAGAAGAAAAGGGTGAGATTTGCAGAGGATGTGAAAGAGCCAAAA
GGAAATGGAGAAGAGTACAGAAAAAAGCACAATGAGAAGATGGCTATGGCTCAAAGAACATCAACAACAAATAATTGTAGAAATCAAATTCCTGCAAATCGACTTGCTTT
GTACAATGGAATTCTCAAACAACGATCCCAAAAGATTCAATGTTCATTTTAGTCCAAAGTTTTTTTTTTCTCTTTTAAGGAAAAATATAAATAAAAAAGAATGGTGGAGA
TGATTTAGGTCCCACCCACCCACTTGTTTTCATCTTTTTTAGTAAAAAAGAAATTATAATGTATATATTCATGTTTGTCTTAGTTTGATTGATGGATTAATATACGAGAA
TTTGTC
Protein sequenceShow/hide protein sequence
MSSILSSQGLAIATAMVFSSTALFLAFSKHNKINPILSKSTILHSCLISSDDKKKEKKKKKKRVRFAEDVKEPKGNGEEYRKKHNEKMAMAQRTSTTNNCRNQIPANRLA
LYNGILKQRSQKIQCSF