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Sed0015992 (gene) of Chayote v1 genome

Gene IDSed0015992
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationLG03:11506663..11507241
RNA-Seq ExpressionSed0015992
SyntenySed0015992
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599476.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]4.1e-4072.88Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        MAA +V  E TRNL A YPIEF FDLDMVLSG++DFGCC ++ASDSL ADLP VVA VCAVCLE+FRPDE GKQIPCGHVYH  CISSWLAVA  CPLCR
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Query:  SPVASQPLDLP-STLIGR
          ++ QP + P STLI R
Subjt:  SPVASQPLDLP-STLIGR

KAG7030453.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-4072.88Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        MAA +V  E TRNL A YPIEF FDLDMVLSG++DFGCC ++ASDSL ADLP VVA VCAVCLE+FRPDE GKQIPCGHVYH  CISSWLAVA  CPLCR
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Query:  SPVASQPLDLP-STLIGR
          ++ QP + P STLI R
Subjt:  SPVASQPLDLP-STLIGR

XP_022946863.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]1.9e-4073.73Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        MAA +V  E TRNL A YPIEF FDLDMVLSG++DFGCC ++ASDSL ADLP VVA VCAVCLE+FRPDE GKQIPCGHVYH  CISSWLAVA  CPLCR
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Query:  SPVASQPLDLP-STLIGR
          +A QP + P STLI R
Subjt:  SPVASQPLDLP-STLIGR

XP_023545409.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]1.9e-4073.73Show/hide
Query:  MAAAAVMNEATRNLA-TYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        MAA +V  E TRNLA  YPIEF FDLDMVLSG++DFGCC ++ASDSL ADLP VVA VCAVCLE+FRPDE GKQIPCGHVYH  CISSWLAVA  CPLCR
Subjt:  MAAAAVMNEATRNLA-TYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Query:  SPVASQPLDLP-STLIGR
          +A QP + P STLI R
Subjt:  SPVASQPLDLP-STLIGR

XP_038877422.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]6.4e-4176.07Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        MAAAAVM E TRNL ATYPIEF FDLDMVLSG++DFGCC ++A+DSL ADLP VVA VCAVCLE+F PDE GKQIPCGHVYH  CISSWL VA  CPLCR
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Query:  SPVASQPLDLPSTLIGR
          VA QP D  STLI R
Subjt:  SPVASQPLDLPSTLIGR

TrEMBL top hitse value%identityAlignment
A0A0A0LKR7 RING-type domain-containing protein1.0e-3670.09Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        MAAAAVM E T NL + YPIEF FDLD VLSG++D GCC +T SDS  AD P VVA VCAVCL++F PDE GKQIPCGHVYH  CISSWL VA  CPLCR
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Query:  SPVASQPLDLPSTLIGR
          VA QP D  STLI R
Subjt:  SPVASQPLDLPSTLIGR

A0A1S4DZX3 RING-H2 finger protein ATL5-like2.1e-3468.64Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGC-CHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLC
        MAAAAVM E T  L + YPIEF FDLD VLSG++D  C C +T SDS  AD P VVA VCAVCL++FRPDE GKQIPCGHVYH  CISSWL VA  CPLC
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGC-CHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLC

Query:  RSPVASQPLDLPSTLIGR
        R  VA QP D  STLI R
Subjt:  RSPVASQPLDLPSTLIGR

A0A5A7V2P4 RING-H2 finger protein ATL5-like2.1e-3468.64Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGC-CHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLC
        MAAAAVM E T  L + YPIEF FDLD VLSG++D  C C +T SDS  AD P VVA VCAVCL++FRPDE GKQIPCGHVYH  CISSWL VA  CPLC
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGC-CHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLC

Query:  RSPVASQPLDLPSTLIGR
        R  VA QP D  STLI R
Subjt:  RSPVASQPLDLPSTLIGR

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like6.0e-3771.19Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTA---SDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCP
        MAA AV+ E TRNL A YP+E  FDLDMVLSG +DFGCCHVTA   SDS+ ADLP VVA VCAVC E+FR DE GKQIPCGHVYH PCISSWLAVA  CP
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTA---SDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCP

Query:  LCRSPVASQPLDLPSTLI
        LCR  V  +P   PST I
Subjt:  LCRSPVASQPLDLPSTLI

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like9.0e-4173.73Show/hide
Query:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        MAA +V  E TRNL A YPIEF FDLDMVLSG++DFGCC ++ASDSL ADLP VVA VCAVCLE+FRPDE GKQIPCGHVYH  CISSWLAVA  CPLCR
Subjt:  MAAAAVMNEATRNL-ATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Query:  SPVASQPLDLP-STLIGR
          +A QP + P STLI R
Subjt:  SPVASQPLDLP-STLIGR

SwissProt top hitse value%identityAlignment
O22283 Probable E3 ubiquitin-protein ligase RHC2A1.1e-0844Show/hide
Query:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL
        CAVC ENF      +++PC H+YH  CI  WLA+   CP+CR  + ++ L
Subjt:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL

P90990 E3 ubiquitin-protein ligase trul-11.5e-0844.68Show/hide
Query:  GVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPV
        G C++C E+ + ++    I CGH+YHH CIS W+A   +CP CR  V
Subjt:  GVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPV

Q9SNB6 E3 ubiquitin-protein ligase RDUF11.1e-0836.62Show/hide
Query:  TASDSLP----ADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL
        +A +SLP    +D        CAVC E F     G+++PC H++H  CI  WL++   CP+CR  + S P+
Subjt:  TASDSLP----ADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL

Q9SPL2 E3 ubiquitin-protein ligase CIP84.3e-0851.16Show/hide
Query:  VCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        VCAVC +     E GK++PCGH YH  CI  WL     CP+CR
Subjt:  VCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR

Q9VHI7 E3 ubiquitin-protein ligase Iruka4.3e-0839.22Show/hide
Query:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPLD
        C++C ++F+ DE  +++PC H+YH  CI  WL +   CP+CR  +A    D
Subjt:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPLD

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein1.1e-0950Show/hide
Query:  VCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPV
        VCA+C E F   E GK++ C H+YH  CI SWL +   CP+CR  V
Subjt:  VCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPV

AT2G39720.1 RING-H2 finger C2A8.1e-1044Show/hide
Query:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL
        CAVC ENF      +++PC H+YH  CI  WLA+   CP+CR  + ++ L
Subjt:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL

AT2G44330.1 RING/U-box superfamily protein2.4e-0947.17Show/hide
Query:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR--SPVASQPLD
        CA+C E+F   E  +++PC H+YH+ CI  WL     CPLCR   PVAS   D
Subjt:  CAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR--SPVASQPLD

AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein8.1e-1036.62Show/hide
Query:  TASDSLP----ADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL
        +A +SLP    +D        CAVC E F     G+++PC H++H  CI  WL++   CP+CR  + S P+
Subjt:  TASDSLP----ADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPL

AT5G64920.1 COP1-interacting protein 83.1e-0951.16Show/hide
Query:  VCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR
        VCAVC +     E GK++PCGH YH  CI  WL     CP+CR
Subjt:  VCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCGCTGCTGTGATGAACGAAGCGACAAGAAACTTAGCCACATATCCAATCGAATTTCACTTCGATCTGGACATGGTTTTGTCAGGATCCAACGATTTCGGATG
CTGCCACGTCACCGCTTCCGATTCTCTGCCGGCGGATTTGCCGGCGGTGGTCGCCGGTGTTTGCGCCGTTTGTCTGGAGAATTTCCGGCCAGATGAGCCTGGCAAACAAA
TCCCATGCGGCCACGTGTACCACCACCCTTGTATTTCCTCTTGGCTCGCCGTCGCCGGCCGCTGCCCTCTCTGTCGCTCCCCCGTCGCCTCTCAACCGCTGGATTTGCCT
TCCACTTTGATCGGACGGTAG
mRNA sequenceShow/hide mRNA sequence
GTTTTTTCTTTTTTCTCTCATTAAAATTTTTCTCAAAAATCTCTGCCAAAAAATGGCTGCCGCTGCTGTGATGAACGAAGCGACAAGAAACTTAGCCACATATCCAATCG
AATTTCACTTCGATCTGGACATGGTTTTGTCAGGATCCAACGATTTCGGATGCTGCCACGTCACCGCTTCCGATTCTCTGCCGGCGGATTTGCCGGCGGTGGTCGCCGGT
GTTTGCGCCGTTTGTCTGGAGAATTTCCGGCCAGATGAGCCTGGCAAACAAATCCCATGCGGCCACGTGTACCACCACCCTTGTATTTCCTCTTGGCTCGCCGTCGCCGG
CCGCTGCCCTCTCTGTCGCTCCCCCGTCGCCTCTCAACCGCTGGATTTGCCTTCCACTTTGATCGGACGGTAGAGTTTTTTTTTTAGTCAAGTTCGTTTGATCATAAATA
ATGTATGCTTCTTAATTGTAATTGCAAAAACGGCGTTAAATTCTCAAAAATTGATATTTAATTCCGATTGTATTAATACGAAAAATTGTAATTGCAGACTCTTTGCTAAA
TTATGAAAATATCTACCAAATTGAACAAA
Protein sequenceShow/hide protein sequence
MAAAAVMNEATRNLATYPIEFHFDLDMVLSGSNDFGCCHVTASDSLPADLPAVVAGVCAVCLENFRPDEPGKQIPCGHVYHHPCISSWLAVAGRCPLCRSPVASQPLDLP
STLIGR