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Sed0016005 (gene) of Chayote v1 genome

Gene IDSed0016005
OrganismSechium edule (Chayote v1)
DescriptionPRKCSH-like domain-containing protein
Genome locationLG04:43136924..43139902
RNA-Seq ExpressionSed0016005
SyntenySed0016005
Gene Ontology termsGO:0006491 - N-glycan processing (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0017177 - glucosidase II complex (cellular component)
InterPro domainsIPR028146 - Glucosidase II beta subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455474.1 PREDICTED: glucosidase 2 subunit beta isoform X1 [Cucumis melo]6.2e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
XP_022136263.1 glucosidase 2 subunit beta [Momordica charantia]6.2e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
XP_022952390.1 glucosidase 2 subunit beta [Cucurbita moschata]6.2e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
XP_022969237.1 glucosidase 2 subunit beta [Cucurbita maxima]6.2e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
XP_023554618.1 glucosidase 2 subunit beta [Cucurbita pepo subsp. pepo]6.2e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
TrEMBL top hitse value%identityAlignment
A0A1S4E0C8 glucosidase 2 subunit beta isoform X13.0e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
A0A5D3BIQ3 Glucosidase 2 subunit beta isoform X13.0e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
A0A6J1C765 glucosidase 2 subunit beta3.0e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
A0A6J1GLM3 glucosidase 2 subunit beta3.0e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
A0A6J1HVT0 glucosidase 2 subunit beta3.0e-0883.33Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        RSFTIDR NDDF DCVD TDE GTS CAR KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
SwissProt top hitse value%identityAlignment
A2WNF5 Glucosidase 2 subunit beta1.3e-0561.76Show/hide
Query:  FTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        F  D+ NDDF DC D TDE GTS C   KFYC+N
Subjt:  FTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
Q5NBP9 Glucosidase 2 subunit beta1.3e-0561.76Show/hide
Query:  FTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        F  D+ NDDF DC D TDE GTS C   KFYC+N
Subjt:  FTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
Q9FM96 Glucosidase 2 subunit beta7.9e-0661.11Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        + FT  + NDDF DC D TDE GTS C   KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
Arabidopsis top hitse value%identityAlignment
AT2G42390.1 protein kinase C substrate, heavy chain-related1.0e-0866.67Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        +SFT DR ND+F DC+D TDE GTS C   KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
AT5G56360.1 calmodulin-binding protein5.6e-0761.11Show/hide
Query:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN
        + FT  + NDDF DC D TDE GTS C   KFYCRN
Subjt:  RSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGATTGATCTATAGATCTTTCACCATTGATCGTCGCAATGACGATTTTCTGGACTGCGTCGATGAGACCGATGAGCTAGGTACTTCTGTCTGTGCAAGAAAGAA
ATTCTATTGTAGGAATTATCTACTCGTGTTAACGATCGTATTTGTGCTTGACTTTCAATGTCACCCGACGCAACAACTTGACCGAAACTGCAGCCTTTCGTTCTGGAACA
AACCGAATGAAAGTTGTTTGAAAGTAAAATCTGGGGCATCCTTCAAAGGACCACTGGCTTTCATTTCCAAACTCAAATTCACCTAA
mRNA sequenceShow/hide mRNA sequence
TCGACTTTTAACATATGAAAGTTTACATTTTCAAAAAAAAAAAAAAACATATGAAAGTTTACTATAAAAGTTTTGTGGCGGAAGCAAAATCTTCACAGACATGGAAGTAG
GTCGTTGTTTCTTCTGCCTGCTTGCGCTAGATTTGCTCTTGAAATCAAAATTTATGAGAAATATTACACATCGGAGATCATATAATGCAAGGATTGATCTATAGATCTTT
CACCATTGATCGTCGCAATGACGATTTTCTGGACTGCGTCGATGAGACCGATGAGCTAGGTACTTCTGTCTGTGCAAGAAAGAAATTCTATTGTAGGAATTATCTACTCG
TGTTAACGATCGTATTTGTGCTTGACTTTCAATGTCACCCGACGCAACAACTTGACCGAAACTGCAGCCTTTCGTTCTGGAACAAACCGAATGAAAGTTGTTTGAAAGTA
AAATCTGGGGCATCCTTCAAAGGACCACTGGCTTTCATTTCCAAACTCAAATTCACCTAA
Protein sequenceShow/hide protein sequence
MQGLIYRSFTIDRRNDDFLDCVDETDELGTSVCARKKFYCRNYLLVLTIVFVLDFQCHPTQQLDRNCSLSFWNKPNESCLKVKSGASFKGPLAFISKLKFT