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Sed0016038 (gene) of Chayote v1 genome

Gene IDSed0016038
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:42149075..42149479
RNA-Seq ExpressionSed0016038
SyntenySed0016038
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-4066.92Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDNLRMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.8e-4066.17Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDN+RMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-4066.92Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+K+FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDN+RMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-4166.92Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RDA ESS TH++K   KGK +MQE QPQ+STSIASLSVQQL++MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDNLRMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-3965.41Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RDAAESS TH++K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QY 
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDN+RMP  YQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein1.4e-4066.92Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDNLRMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
A0A5A7TZU9 Ribonuclease H1.4e-4066.17Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDN+RMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
A0A5A7U5H1 Ty3-gypsy retrotransposon protein6.1e-4166.92Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+K+FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDN+RMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
A0A5A7U9H0 Ty3-gypsy retrotransposon protein2.7e-4166.92Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RDA ESS TH++K   KGK +MQE QPQ+STSIASLSVQQL++MI N+I+ QYG
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDNLRMP GYQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
A0A5A7UU70 Ty3-gypsy retrotransposon protein1.1e-3965.41Show/hide
Query:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG
        MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RDAAESS TH++K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QY 
Subjt:  MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYG

Query:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
        G  Q++  YSKPYTKRIDN+RMP  YQPPKFQ+
Subjt:  GSPQSYLTYSKPYTKRIDNLRMPIGYQPPKFQR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGATGATGGCTGATGCAGATACGTCAGGCGATGAGAGAATAGCGGAGCTTGAAAGGAAAGTGGAGATGTTGCTGAAAACAGTTGAGGATAAAGAGTTTGAAAT
CACTTCTCTAAAGCATTACCTTGAGACTCGAGATGCTGCCGAATCTAGTCAAACGCATGTTGTAAAGACTAATGGAAAAGGGAAGACTCTTATGCAAGAAGTTCAACCCC
AACACTCAACTTCTATCGCTTCGTTATCCGTCCAACAACTTAATGATATGATCACAAACACCATTAGAGCTCAATATGGCGGGTCTCCTCAAAGTTATCTCACATATTCC
AAACCGTATACCAAAAGAATTGACAACTTAAGAATGCCAATCGGGTATCAACCTCCAAAATTTCAAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGATGATGGCTGATGCAGATACGTCAGGCGATGAGAGAATAGCGGAGCTTGAAAGGAAAGTGGAGATGTTGCTGAAAACAGTTGAGGATAAAGAGTTTGAAAT
CACTTCTCTAAAGCATTACCTTGAGACTCGAGATGCTGCCGAATCTAGTCAAACGCATGTTGTAAAGACTAATGGAAAAGGGAAGACTCTTATGCAAGAAGTTCAACCCC
AACACTCAACTTCTATCGCTTCGTTATCCGTCCAACAACTTAATGATATGATCACAAACACCATTAGAGCTCAATATGGCGGGTCTCCTCAAAGTTATCTCACATATTCC
AAACCGTATACCAAAAGAATTGACAACTTAAGAATGCCAATCGGGTATCAACCTCCAAAATTTCAAAGAATTTGA
Protein sequenceShow/hide protein sequence
MSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHVVKTNGKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGSPQSYLTYS
KPYTKRIDNLRMPIGYQPPKFQRI