; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016046 (gene) of Chayote v1 genome

Gene IDSed0016046
OrganismSechium edule (Chayote v1)
DescriptionVQ motif-containing protein
Genome locationLG06:43322044..43322739
RNA-Seq ExpressionSed0016046
SyntenySed0016046
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-2953.29Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE
        MSP K   I+GPRP PL++HK SR IRKPS PPPQLR+PVIIYTHSPK+IHTQP+DFMALVQRLTG +P  A+    K PS       DN+ S+SV+T E
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE

Query:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSPSFMEFLKGLTEF
        +                     SN PLFTP S                LVNS SPSFMEFLKGL EF
Subjt:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSPSFMEFLKGLTEF

KGN52621.2 hypothetical protein Csa_008052 [Cucumis sativus]1.3e-2362.5Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE
        MSP KS +INGPRPSPL+IH  SR IRK    P QLRQP+IIYTHSPK+IHT P+DFMALVQRLTG  P         KPSL  +NL DND S+ V T E
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE

Query:  ENND
        + N+
Subjt:  ENND

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]5.8e-2748.21Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE
        MSP KS  ING RPSPL+IH  SR +RK     PQLRQP+IIYTHSPK+IHT P+DFMALVQRLTG  P          P    +N  DND ++ V + E
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE

Query:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF
        + N+                          N SV +YS + TTPFSSP  ++S SPSFM+FLK L EF
Subjt:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]2.8e-3759.54Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLI--DNDCSNSVLT
        MSPAKSCDINGPRPSPL+IHK SR IRK   PPPQLRQP+IIYTHSPK+IHTQP+DFMALVQRLTG  P             +R N +  DND S+SVLT
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLI--DNDCSNSVLT

Query:  NEENNDDDGDDDDNL----CQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSPSFMEFLKGLTEF
         E N  D       +     QS S    ++VPLFTP  +  RY+ + T F+SPGL NS SPSFMEFLKGL EF
Subjt:  NEENNDDDGDDDDNL----CQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSPSFMEFLKGLTEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]3.1e-3659.76Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGL-APSIANEETVKKPSLERKNLIDNDCSNSVLTN
        MSP KSC+INGPRPSPL+IHK SRFIRK     PQLRQPVIIYTHSPK+IHTQP+DFMALVQRLTG   P           S   +N  DND S+S LT 
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGL-APSIANEETVKKPSLERKNLIDNDCSNSVLTN

Query:  EENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF
        EE  ++ GD      Q  S++L   V     NSS+ RYS + TTPFSSP L+NS SPSFMEFLK L EF
Subjt:  EENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein4.2e-3152.94Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE
        MSP KS +INGPRPSPL+IH  SR IRK    P QLRQP+IIYTHSPK+IHT P+DFMALVQRLTG  P         KPSL  +NL DND S+ V T E
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE

Query:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE--TTPFSSPG-LVNSFSPSFMEFLKGLTEF
        + N+                          N SV +YS    TTPFSSP  L +S SPSFM+FLK L EF
Subjt:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE--TTPFSSPG-LVNSFSPSFMEFLKGLTEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like2.8e-2748.21Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE
        MSP KS  ING RPSPL+IH  SR +RK     PQLRQP+IIYTHSPK+IHT P+DFMALVQRLTG  P          P    +N  DND ++ V + E
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE

Query:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF
        + N+                          N SV +YS + TTPFSSP  ++S SPSFM+FLK L EF
Subjt:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF

A0A5D3CFH5 VQ motif-containing protein 82.8e-2748.21Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE
        MSP KS  ING RPSPL+IH  SR +RK     PQLRQP+IIYTHSPK+IHT P+DFMALVQRLTG  P          P    +N  DND ++ V + E
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNE

Query:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF
        + N+                          N SV +YS + TTPFSSP  ++S SPSFM+FLK L EF
Subjt:  ENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGE-TTPFSSPGLVNSFSPSFMEFLKGLTEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic1.3e-3759.54Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLI--DNDCSNSVLT
        MSPAKSCDINGPRPSPL+IHK SR IRK   PPPQLRQP+IIYTHSPK+IHTQP+DFMALVQRLTG  P             +R N +  DND S+SVLT
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLI--DNDCSNSVLT

Query:  NEENNDDDGDDDDNL----CQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSPSFMEFLKGLTEF
         E N  D       +     QS S    ++VPLFTP  +  RY+ + T F+SPGL NS SPSFMEFLKGL EF
Subjt:  NEENNDDDGDDDDNL----CQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSPSFMEFLKGLTEF

W9RYA3 VQ domain-containing protein4.2e-2344.95Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSR----PPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANE---ETVKKPSLER---------
        MSP K   ING RPSPL I+K S  I KPS      PPQ  QPVIIYTHSP++IHT+PR+FMA+VQ LTG++ S  N+   +T    S +R         
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRKPSR----PPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANE---ETVKKPSLER---------

Query:  --------KNLIDNDCSNSVLTNEENNDDDGDDDDNLCQSNSLLLSSNVPLFTPN-----SSVFRYSGETTPFSSPGLVNS--FSPSFMEFLKGLTEF
                +   DN+ S+SVLT+E NN      D N   SN  L  +++PLFTPN      + FR+   T   SSP L +S   SPSF+EF+KGL E+
Subjt:  --------KNLIDNDCSNSVLTNEENNDDDGDDDDNLCQSNSLLLSSNVPLFTPN-----SSVFRYSGETTPFSSPGLVNS--FSPSFMEFLKGLTEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B7.6e-0635.71Show/hide
Query:  GPRPSPLVIHKRS-RFIRKP---------------------SRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKN
        GP+P+PL +   S + I+KP                     SRPPP    PV IYT +P++IHT P +FM LVQRLTG   +     +    + E K+
Subjt:  GPRPSPLVIHKRS-RFIRKP---------------------SRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKN

Q8LGD5 Protein MKS12.1e-0831.28Show/hide
Query:  KSCDINGPRPSPLVIHKRSRFIRKP----------SRPPPQL-RQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEE--------TVKKPSLER-
        +   I GPRPSPL +HK S  I+KP           +PPP + R+PV+IY  SPKV+H    +FM +VQRLTG++  +  E           +  S E  
Subjt:  KSCDINGPRPSPLVIHKRSRFIRKP----------SRPPPQL-RQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEE--------TVKKPSLER-

Query:  -----KNLIDNDCSNSVLT-NEENNDDDGDDDDNLCQSNSLLLSSNVPLFTP------------NSSVFRYSGETTPFSSPGLVNSF-SPSFMEF
             K     D +  + T  EE  +  G     L  S +LL +++  +F+P               +F  +G  +PF SPG  +   SP+F +F
Subjt:  -----KNLIDNDCSNSVLT-NEENNDDDGDDDDNLCQSNSLLLSSNVPLFTP------------NSSVFRYSGETTPFSSPGLVNSF-SPSFMEF

Q9CA36 VQ motif-containing protein 8, chloroplastic7.6e-1438.75Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRK----PSRPPPQLR-QPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNS
        M P +  +ING RPS L +   S  I+K     S+P P  R  PVIIY HSPKVIHT+  DFMALVQRLTGL      +E +++ +        ++ S+S
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRK----PSRPPPQLR-QPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNS

Query:  VLTNEENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSP
        V+T E N  DD                +++PLFTP+S     S     + SP   +SF P
Subjt:  VLTNEENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSP

Q9LS54 VQ motif-containing protein 202.1e-0832.68Show/hide
Query:  PRPSPLVIHKRSRFIRKPSRP-----PPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLA--------------PSIAN--EETVKKPSLERKN----
        P P  L ++K S  I+KP  P       + R PVIIYTH+P++IHT P+DFMALVQ+LTG+               P +      TV +P+++RKN    
Subjt:  PRPSPLVIHKRSRFIRKPSRP-----PPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLA--------------PSIAN--EETVKKPSLERKN----

Query:  -------------------------LIDNDC-SNSVLTNEENNDDDGDDDDNL
                                 +I  D  S+SV+T EEN  + G  + +L
Subjt:  -------------------------LIDNDC-SNSVLTNEENNDDDGDDDDNL

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding5.4e-0735.71Show/hide
Query:  GPRPSPLVIHKRS-RFIRKP---------------------SRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKN
        GP+P+PL +   S + I+KP                     SRPPP    PV IYT +P++IHT P +FM LVQRLTG   +     +    + E K+
Subjt:  GPRPSPLVIHKRS-RFIRKP---------------------SRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKN

AT1G21326.1 VQ motif-containing protein1.3e-0845.24Show/hide
Query:  KSCDINGPRPSPLVIHKRS-RFIRKP---------------------SRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTG
        +S  I GPRP PL +   S + I+KP                     SRPPP    PVIIYT SP++IHT P +FM LVQRLTG
Subjt:  KSCDINGPRPSPLVIHKRS-RFIRKP---------------------SRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTG

AT1G68450.1 VQ motif-containing protein5.4e-1538.75Show/hide
Query:  MSPAKSCDINGPRPSPLVIHKRSRFIRK----PSRPPPQLR-QPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNS
        M P +  +ING RPS L +   S  I+K     S+P P  R  PVIIY HSPKVIHT+  DFMALVQRLTGL      +E +++ +        ++ S+S
Subjt:  MSPAKSCDINGPRPSPLVIHKRSRFIRK----PSRPPPQLR-QPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNS

Query:  VLTNEENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSP
        V+T E N  DD                +++PLFTP+S     S     + SP   +SF P
Subjt:  VLTNEENNDDDGDDDDNLCQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSP

AT3G18360.1 VQ motif-containing protein1.5e-0932.68Show/hide
Query:  PRPSPLVIHKRSRFIRKPSRP-----PPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLA--------------PSIAN--EETVKKPSLERKN----
        P P  L ++K S  I+KP  P       + R PVIIYTH+P++IHT P+DFMALVQ+LTG+               P +      TV +P+++RKN    
Subjt:  PRPSPLVIHKRSRFIRKPSRP-----PPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLA--------------PSIAN--EETVKKPSLERKN----

Query:  -------------------------LIDNDC-SNSVLTNEENNDDDGDDDDNL
                                 +I  D  S+SV+T EEN  + G  + +L
Subjt:  -------------------------LIDNDC-SNSVLTNEENNDDDGDDDDNL

AT3G18690.1 MAP kinase substrate 11.5e-0931.28Show/hide
Query:  KSCDINGPRPSPLVIHKRSRFIRKP----------SRPPPQL-RQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEE--------TVKKPSLER-
        +   I GPRPSPL +HK S  I+KP           +PPP + R+PV+IY  SPKV+H    +FM +VQRLTG++  +  E           +  S E  
Subjt:  KSCDINGPRPSPLVIHKRSRFIRKP----------SRPPPQL-RQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEE--------TVKKPSLER-

Query:  -----KNLIDNDCSNSVLT-NEENNDDDGDDDDNLCQSNSLLLSSNVPLFTP------------NSSVFRYSGETTPFSSPGLVNSF-SPSFMEF
             K     D +  + T  EE  +  G     L  S +LL +++  +F+P               +F  +G  +PF SPG  +   SP+F +F
Subjt:  -----KNLIDNDCSNSVLT-NEENNDDDGDDDDNLCQSNSLLLSSNVPLFTP------------NSSVFRYSGETTPFSSPGLVNSF-SPSFMEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCAGCTAAATCTTGCGACATCAATGGCCCTCGCCCATCTCCCCTAGTAATCCACAAACGTTCTCGATTTATCCGAAAGCCCTCTCGACCGCCGCCGCAGCTCCG
ACAGCCGGTCATCATATACACTCATTCCCCCAAAGTCATCCACACGCAGCCAAGAGATTTTATGGCCCTTGTCCAACGGCTCACCGGCCTCGCACCGTCCATCGCCAATG
AAGAAACGGTTAAGAAACCGTCGCTCGAGAGAAAGAATCTTATCGACAATGATTGTTCTAATTCTGTTCTGACAAATGAGGAGAATAATGATGATGATGGTGATGATGAT
GATAATCTTTGTCAAAGTAATTCGTTGTTGTTGTCGTCGAATGTTCCTTTGTTCACTCCGAATTCTTCGGTTTTTAGGTATTCTGGTGAAACGACGCCGTTTTCGTCGCC
CGGTTTGGTTAATTCCTTTTCCCCATCTTTCATGGAGTTCCTCAAGGGGTTAACGGAGTTTTAA
mRNA sequenceShow/hide mRNA sequence
CCAACCATGAGCCCAGCTAAATCTTGCGACATCAATGGCCCTCGCCCATCTCCCCTAGTAATCCACAAACGTTCTCGATTTATCCGAAAGCCCTCTCGACCGCCGCCGCA
GCTCCGACAGCCGGTCATCATATACACTCATTCCCCCAAAGTCATCCACACGCAGCCAAGAGATTTTATGGCCCTTGTCCAACGGCTCACCGGCCTCGCACCGTCCATCG
CCAATGAAGAAACGGTTAAGAAACCGTCGCTCGAGAGAAAGAATCTTATCGACAATGATTGTTCTAATTCTGTTCTGACAAATGAGGAGAATAATGATGATGATGGTGAT
GATGATGATAATCTTTGTCAAAGTAATTCGTTGTTGTTGTCGTCGAATGTTCCTTTGTTCACTCCGAATTCTTCGGTTTTTAGGTATTCTGGTGAAACGACGCCGTTTTC
GTCGCCCGGTTTGGTTAATTCCTTTTCCCCATCTTTCATGGAGTTCCTCAAGGGGTTAACGGAGTTTTAATGATGTTTATGAATTATTCTTCGTGTTTGATTTTTATGGG
ATAAAAGTTGTTCATAAATTGATTTGCATGTTTATTTACATGATTTTTAGTGTTTGAGAAAAGTAATAATGTGTGAATTAGCTATCAAAAATTCAATTCATTCTTTCAGC
CATATGGTTTTTTTTTTCCTTCTATCTTTCGTGGTC
Protein sequenceShow/hide protein sequence
MSPAKSCDINGPRPSPLVIHKRSRFIRKPSRPPPQLRQPVIIYTHSPKVIHTQPRDFMALVQRLTGLAPSIANEETVKKPSLERKNLIDNDCSNSVLTNEENNDDDGDDD
DNLCQSNSLLLSSNVPLFTPNSSVFRYSGETTPFSSPGLVNSFSPSFMEFLKGLTEF