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Sed0016063 (gene) of Chayote v1 genome

Gene IDSed0016063
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S19
Genome locationLG07:3102690..3104398
RNA-Seq ExpressionSed0016063
SyntenySed0016063
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]7.0e-7497.2Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_004141465.1 40S ribosomal protein S19-3 [Cucumis sativus]1.9e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]3.2e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022938991.1 40S ribosomal protein S19-3 [Cucurbita moschata]7.0e-7497.2Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]7.0e-7497.2Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A0A0KSI3 Uncharacterized protein9.0e-7597.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A1S3CB93 40S ribosomal protein S19-39.0e-7597.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A5A7T7J1 40S ribosomal protein S19-3-like9.0e-7597.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1EBL3 40S ribosomal protein S19-3-like1.5e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTL0 40S ribosomal protein S19-3-like1.5e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S196.4e-6278.57Show/hide
Query:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWY+ RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ++ I+DVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S191.9e-4558.21Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+ DWYF+RAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  QQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ L IV+ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-31.0e-6784.51Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ +NIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-24.3e-6684.89Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWY++RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ ++IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-11.3e-6783.22Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ +NIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein9.5e-6983.22Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ +NIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein3.1e-6784.89Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWY++RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ ++IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein7.3e-6984.51Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ +NIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGCTAAGACCGTCAAGGATGTTTCTCCTCACGAGTTCGTCAAGGCTTACGCCGCTCATCTGAAGCGATCTGGAAAGGTTGAGCTTCCTCCATGGACGGACAT
TGTGAAGACTGCAAGATTCAAGGAGCTTGCACCATATGATGCAGATTGGTATTTTGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTG
GGGCATTCAAGAGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGCGGTGCCATTGCCCGCCACATTTTACAACAGTTGCAGGAA
TTGAACATTGTTGATGTTGACCCAAAGGGTGGACGAAGAATTACTTCTAGCGGTCGACGAGACCTCGATCAAGTTGCTGGTAGGATTGTTGTTGCCCCTTGA
mRNA sequenceShow/hide mRNA sequence
TTTCGGAATATAAATACAGAACTCTTCTTGAGAAACCCTAGAATTTGAGAAAGGCGGAAATCCTAATTCTGCAATCGGAGCTTTTGCCGCCCTTTGCTCAAAGAATCGAA
CAGCCATGGCCACTGCTAAGACCGTCAAGGATGTTTCTCCTCACGAGTTCGTCAAGGCTTACGCCGCTCATCTGAAGCGATCTGGAAAGGTTGAGCTTCCTCCATGGACG
GACATTGTGAAGACTGCAAGATTCAAGGAGCTTGCACCATATGATGCAGATTGGTATTTTGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGG
TGTTGGGGCATTCAAGAGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGCGGTGCCATTGCCCGCCACATTTTACAACAGTTGC
AGGAATTGAACATTGTTGATGTTGACCCAAAGGGTGGACGAAGAATTACTTCTAGCGGTCGACGAGACCTCGATCAAGTTGCTGGTAGGATTGTTGTTGCCCCTTGATTG
ATCAATTACTCGTTTGGTTATTTAGAGACTGATGTTTTGCTGTTGAGATACAATTTCTTATGAGCCATTAAAATTTTGAATTTAGCTGTTGAAAGGTTTTTCAGATGAAG
ATCTCAAGTTTTCTCACGGTTTTTGAAGGTTCTAATGTTAATTTACTACTTTTGTTATACATCTTATGCGTTGAGATATCGTTAACCTCATTCTTATT
Protein sequenceShow/hide protein sequence
MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE
LNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP