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Sed0016103 (gene) of Chayote v1 genome

Gene IDSed0016103
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L29
Genome locationLG04:37202003..37203828
RNA-Seq ExpressionSed0016103
SyntenySed0016103
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002673 - Ribosomal protein L29e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138412.1 60S ribosomal protein L29-1-like [Momordica charantia]2.2e-2295Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSA++A+EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

XP_022930218.1 60S ribosomal protein L29-1 [Cucurbita moschata]6.5e-2293.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS ++A+EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

XP_023000055.1 60S ribosomal protein L29-1 [Cucurbita maxima]6.5e-2293.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS ++A+EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

XP_023000056.1 60S ribosomal protein L29-1-like [Cucurbita maxima]2.9e-2295Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS +S TEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

XP_023514068.1 60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo]8.5e-2293.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK  +S TEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

TrEMBL top hitse value%identityAlignment
A0A6J1CB13 60S ribosomal protein L291.1e-2295Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSA++A+EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

A0A6J1EUF7 60S ribosomal protein L293.1e-2293.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS ++A+EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

A0A6J1KET9 60S ribosomal protein L291.4e-2295Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS +S TEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

A0A6J1KHA4 60S ribosomal protein L293.1e-2293.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS ++A+EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

A0A6J1L4P4 60S ribosomal protein L299.1e-2291.67Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS ++ +EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

SwissProt top hitse value%identityAlignment
P47914 60S ribosomal protein L292.1e-1578.85Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK

Q58DW3 60S ribosomal protein L292.1e-1578.85Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK

Q84WM0 60S ribosomal protein L29-26.3e-2080Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KS ++A  E
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

Q8HXB8 60S ribosomal protein L292.1e-1578.85Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK

Q9M7X7 60S ribosomal protein L29-14.8e-2078.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+ ++A+ E
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

Arabidopsis top hitse value%identityAlignment
AT3G06680.1 Ribosomal L29e protein family1.1e-2269.14Show/hide
Query:  STVLELASLPL------VVYLMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        S +  LASLP       VV  MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KS ++A  E
Subjt:  STVLELASLPL------VVYLMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

AT3G06680.2 Ribosomal L29e protein family4.5e-2180Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KS ++A  E
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

AT3G06700.1 Ribosomal L29e protein family3.4e-2178.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+ ++A+ E
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

AT3G06700.2 Ribosomal L29e protein family3.4e-2178.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+ ++A+ E
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE

AT3G06700.3 Ribosomal L29e protein family3.4e-2178.33Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+ ++A+ E
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAGTGTATTGCTCATTGGGATCTCCACTTCTCTACGGTCTTGGAACTTGCTTCTCTTCCTTTGGTGGTTTATTTGATGGCGAAGTCGAAGAATCACACAGCGCA
CAATCAGTCCCGCAAAGCCCATAGGAATGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGACCCTAAGTTTTTGAGAAACCAGAGGTACGCGA
AGAAACACAACAACAAGAGTGCCGATTCAGCAACTGAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACGAGTGTATTGCTCATTGGGATCTCCACTTCTCTACGGTCTTGGAACTTGCTTCTCTTCCTTTGGTGGTTTATTTGATGGCGAAGTCGAAGAATCACACAGCGCA
CAATCAGTCCCGCAAAGCCCATAGGAATGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGACCCTAAGTTTTTGAGAAACCAGAGGTACGCGA
AGAAACACAACAACAAGAGTGCCGATTCAGCAACTGAAGAATAG
Protein sequenceShow/hide protein sequence
MNECIAHWDLHFSTVLELASLPLVVYLMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSADSATEE