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Sed0016108 (gene) of Chayote v1 genome

Gene IDSed0016108
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG05:25145806..25146454
RNA-Seq ExpressionSed0016108
SyntenySed0016108
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017640041.1 PREDICTED: uncharacterized protein LOC108481412 [Gossypium arboreum]8.3e-1231.89Show/hide
Query:  EFCEQYMEDIKSVSTMLHEDAISGTNPVMERKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAV
        EF   Y  +IK VS     D     N +   K WRPP D+ +K+N DA      N+   G+I RNK GE +A                         MA 
Subjt:  EFCEQYMEDIKSVSTMLHEDAISGTNPVMERKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAV

Query:  DLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLK
        +LGF+EVEVE DA  V   L      ++ +   I E    A     + FS   R+AN +AH L R          WME+VP  ++
Subjt:  DLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLK

XP_023872391.1 uncharacterized protein LOC111985003 [Quercus suber]9.2e-1126.82Show/hide
Query:  GTNPVMERKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNG-------------------------EEVAMAVDLGFREVEVETDASRVAAFLQKR
        G  P++ +  W PP+    KIN D  ++ ++  CG+GV++RN+NG                         E + +A DLG +++E+E+D+  V + L K 
Subjt:  GTNPVMERKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNG-------------------------EEVAMAVDLGFREVEVETDASRVAAFLQKR

Query:  KFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNAN-WMEDVPENLKKDYILEMTNSLVQVRE
              +  +I+              +   R+AN  AH+LAR A   V + N W+ED+P  + +  + +++N LV V +
Subjt:  KFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNAN-WMEDVPENLKKDYILEMTNSLVQVRE

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]4.9e-1233.11Show/hide
Query:  WRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAVDLGFREVEVETDASRVAAFLQKRKFSRTEVGFI
        WRPP     K+N DA I+  + R G G ++RN+ GE +A                          AVD GF E+ +E D+  V   L       + VG +
Subjt:  WRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAVDLGFREVEVETDASRVAAFLQKRKFSRTEVGFI

Query:  IDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVP
        + +   L   L +VSFSW  RD N +AH LA+ A     +  WMED P
Subjt:  IDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVP

XP_030924586.1 uncharacterized protein LOC115951544 [Quercus lobata]9.2e-1127.68Show/hide
Query:  QYMEDIKSVSTMLHEDAISGTNPVMERKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAVDLGF
        +Y+ED       L    I+  + V     W PP + + K+N DA I+ + +  G+G ++ N   E +A                          A+D GF
Subjt:  QYMEDIKSVSTMLHEDAISGTNPVMERKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAVDLGF

Query:  REVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVP
         ++ +E D   V   +   +   + +G +I +   LA  L +VSFS+  R AN +AH LAR A   V +  W+ED P
Subjt:  REVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVP

XP_030936218.1 uncharacterized protein LOC115961366 [Quercus lobata]7.0e-1128.81Show/hide
Query:  KSVSTMLHEDAISGTNPVME----RKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAVDLGFRE
        KS     H   +  T PV +    R HWRPP   + KIN D  ++    + GIGV++R+  G  +A                          A+++G + 
Subjt:  KSVSTMLHEDAISGTNPVME----RKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA-------------------------MAVDLGFRE

Query:  VEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPEN
        V +E D+  V   L   +   T +G +I+E   L+    ++ +S   RD N LAH LAR A        WMED+P +
Subjt:  VEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPEN

TrEMBL top hitse value%identityAlignment
A0A2N9EK22 Uncharacterized protein1.1e-1430.77Show/hide
Query:  QYMEDIKSVSTMLH---EDAISGTNPVMERK-------HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA----------------------
        Q +E I  VST      ++ +S   P+   +        W+PP  H  KIN D  ++ + N  GIGV+VRNK G  +A                      
Subjt:  QYMEDIKSVSTMLH---EDAISGTNPVMERK-------HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVA----------------------

Query:  ---MAVDLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYI
              ++G +E E E D+  + A L       T  G +I +  +LA AL    F+   R  N LAH LARMA    +   WMEDVP  L++ Y+
Subjt:  ---MAVDLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYI

A0A2N9G3I8 Reverse transcriptase domain-containing protein6.6e-1530.96Show/hide
Query:  QYMEDIKSVSTMLH---EDAISGTNPVMERK-------HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------
        Q +E I  VST      ++ +S   P+   +        W+PP  H  KIN D  ++ + N  GIGV+VRNK G  +A  V                   
Subjt:  QYMEDIKSVSTMLH---EDAISGTNPVMERK-------HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------

Query:  --------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYI
                ++G +E E E D+  + A L       T  G +I +  +LA AL    F+   R  N LAH LARMA    +   WMEDVP  L++ Y+
Subjt:  --------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYI

A0A2N9GYK3 Uncharacterized protein3.9e-1531.28Show/hide
Query:  QYMEDIKSVSTMLH---EDAISGTNPVMERK-------HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------
        Q +E I  VST      ++ +S   P+   +        W+PP  H  KIN D  ++ + N  GIGV+VRNK G  +A  V                   
Subjt:  QYMEDIKSVSTMLH---EDAISGTNPVMERK-------HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------

Query:  ------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYI
              ++G +E E E D+  + A L       T  G +I +  +LA AL    F+   R  N LAH LARMA    +   WMEDVP  L++ Y+
Subjt:  ------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYI

A0A2N9HSI4 Uncharacterized protein7.3e-1434.16Show/hide
Query:  WRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFI
        W+P +D + K+N D  ++ + N  GIGVIVRN+ G+ +A  V                         ++G  E E E D+  V A L     S    G +
Subjt:  WRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFI

Query:  IDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYILEMTN
        I +  +LA ALT   FS   R  N LAH LARMA        WMEDVP   K+ Y+ E+++
Subjt:  IDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYILEMTN

A0A2N9IV57 Uncharacterized protein7.3e-1434.16Show/hide
Query:  WRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFI
        W+P +D + K+N D  ++ + N  GIGVIVRN+ G+ +A  V                         ++G  E E E D+  V A L     S    G +
Subjt:  WRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAV-------------------------DLGFREVEVETDASRVAAFLQKRKFSRTEVGFI

Query:  IDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYILEMTN
        I +  +LA ALT   FS   R  N LAH LARMA        WMEDVP   K+ Y+ E+++
Subjt:  IDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYILEMTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0533.65Show/hide
Query:  EFCEQYMEDIKSVSTMLHEDAISGTNPVMERK---HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEV---AMAVDLGFREVEVETDASRVAAF
        E   + MED +  ST    +    + P +ER     W+ P    +K NTDAT  L+  RCGIG I+RN++G  +   A A+      +E E +A R A  
Subjt:  EFCEQYMEDIKSVSTMLHEDAISGTNPVMERK---HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEV---AMAVDLGFREVEVETDASRVAAF

Query:  LQKR
           R
Subjt:  LQKR

AT4G29090.1 Ribonuclease H-like superfamily protein2.3e-0731.03Show/hide
Query:  GTNPVMERK---HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEV---AMAVDLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAV
        GT P + R     WRPP    +K NTDAT      RCGIG ++RN+ GE     A A+      +E E +A R A  L   +F    V F  D  + + +
Subjt:  GTNPVMERK---HWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEV---AMAVDLGFREVEVETDASRVAAFLQKRKFSRTEVGFIIDETLTLAV

Query:  ----------------------ALTKVSFSWCARDANDLAHRLAR
                                T+V F +  R+ N LA R+AR
Subjt:  ----------------------ALTKVSFSWCARDANDLAHRLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTTCAAAGTGGAAATGAGGCATTTGGCTTACAAGGAACAACCACTTCTTATGATTGGGAGTTTTGTGAGCAGTATATGGAGGATATCAAATCAGTTTCTACAAT
GCTTCACGAAGATGCTATCTCGGGAACGAATCCAGTAATGGAAAGGAAACATTGGCGGCCACCTAAGGACCATATATTGAAAATCAATACGGATGCAACAATTTATCTTC
AAGCTAATAGATGTGGAATTGGGGTGATTGTGCGTAACAAGAATGGGGAGGAAGTAGCAATGGCTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACGGATGCATCT
CGTGTGGCTGCTTTTCTTCAAAAGCGCAAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGACCTTAGCTGTAGCGTTGACGAAGGTATCCTTTTCATG
GTGTGCAAGAGATGCCAACGATCTTGCTCATCGCCTAGCTCGTATGGCACCAGAAGAGGTTTTGAATGCTAATTGGATGGAAGATGTTCCAGAGAATCTAAAAAAAGATT
ACATACTTGAAATGACGAATTCTCTAGTCCAAGTAAGGGAGGGGAGTCTCGTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTATTTCAAAGTGGAAATGAGGCATTTGGCTTACAAGGAACAACCACTTCTTATGATTGGGAGTTTTGTGAGCAGTATATGGAGGATATCAAATCAGTTTCTACAAT
GCTTCACGAAGATGCTATCTCGGGAACGAATCCAGTAATGGAAAGGAAACATTGGCGGCCACCTAAGGACCATATATTGAAAATCAATACGGATGCAACAATTTATCTTC
AAGCTAATAGATGTGGAATTGGGGTGATTGTGCGTAACAAGAATGGGGAGGAAGTAGCAATGGCTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACGGATGCATCT
CGTGTGGCTGCTTTTCTTCAAAAGCGCAAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGACCTTAGCTGTAGCGTTGACGAAGGTATCCTTTTCATG
GTGTGCAAGAGATGCCAACGATCTTGCTCATCGCCTAGCTCGTATGGCACCAGAAGAGGTTTTGAATGCTAATTGGATGGAAGATGTTCCAGAGAATCTAAAAAAAGATT
ACATACTTGAAATGACGAATTCTCTAGTCCAAGTAAGGGAGGGGAGTCTCGTGCTTTAA
Protein sequenceShow/hide protein sequence
MVFQSGNEAFGLQGTTTSYDWEFCEQYMEDIKSVSTMLHEDAISGTNPVMERKHWRPPKDHILKINTDATIYLQANRCGIGVIVRNKNGEEVAMAVDLGFREVEVETDAS
RVAAFLQKRKFSRTEVGFIIDETLTLAVALTKVSFSWCARDANDLAHRLARMAPEEVLNANWMEDVPENLKKDYILEMTNSLVQVREGSLVL