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Sed0016112 (gene) of Chayote v1 genome

Gene IDSed0016112
OrganismSechium edule (Chayote v1)
DescriptionBnaA06g01910D protein
Genome locationLG05:28231623..28232819
RNA-Seq ExpressionSed0016112
SyntenySed0016112
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036506.1 hypothetical protein SDJN02_00124, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-3065.69Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK-----KKVRFAEDVKEPRGNGEEYRKK-----LQAERR-
        M SI+ S+G +IATAMVVSSTALFLAFS HH I P PS  L  S  SS  KKRE+NKNK K     KKVRFAEDVKEPRGNGEEYRK+       AERR 
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK-----KKVRFAEDVKEPRGNGEEYRKK-----LQAERR-

Query:  ---TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF
           TT TRSC+   PAN++ LYNGILK+RSQRI+CSF
Subjt:  ---TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF

XP_022948685.1 uncharacterized protein LOC111452283 isoform X1 [Cucurbita moschata]9.1e-3065.93Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK---KKVRFAEDVKEPRGNGEEYRKK-----LQAERR---
        M SI+ S+G +IATAMVVSSTALFLAFS HH I P PS  L  S  SS  KKRE+NKNK K   KKVRFAEDVKEPRGNGEEYRK+       AERR   
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK---KKVRFAEDVKEPRGNGEEYRKK-----LQAERR---

Query:  -TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF
         +T TRSC+   PAN++ LYNGILK+RSQRI+CSF
Subjt:  -TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF

XP_022998622.1 uncharacterized protein LOC111493207 [Cucurbita maxima]1.2e-2965.41Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI--PSLLPSSFSSSGSKK-REQNKNKKK-KKVRFAEDVKEPRGNGEEYRKK-------LQAERRT
        M SI+ S+G +IATAMVVSSTALFLAFS HH I P    SLL S  SS   K+ + QNKNKKK KKVRFAEDVKEPRGNGEEYRK+        +  RRT
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI--PSLLPSSFSSSGSKK-REQNKNKKK-KKVRFAEDVKEPRGNGEEYRKK-------LQAERRT

Query:  TRTRSCRTLIPANRVVLYNGILKERSQRIECSF
        T TRSC+   PAN++ LYNGILK+RSQRI+CSF
Subjt:  TRTRSCRTLIPANRVVLYNGILKERSQRIECSF

XP_023525383.1 uncharacterized protein LOC111789004 [Cucurbita pepo subsp. pepo]5.3e-3066.67Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK---KKVRFAEDVKEPRGNGEEYRKK-----LQAERR---
        M SI+ S+G +IATAMVVSSTALFLAFS HH I P PS  L  S  SS  KKRE+NKNK K   KKVRFAEDVKEPRGNGEEYRK+       AERR   
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK---KKVRFAEDVKEPRGNGEEYRKK-----LQAERR---

Query:  -TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF
         TT TRSC+   PAN++ LYNGILK+RSQRI+CSF
Subjt:  -TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF

XP_038901306.1 uncharacterized protein LOC120088227 [Benincasa hispida]1.7e-3166.67Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI---PSLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYR-----KKLQAERRTTRT
        M SI+ S+G +IATAMVVSSTALFLAFS+HH I+PI    SLLPS FSS   KK ++ + +KKKKVRFAEDVKEP+GNGEEYR     K    ER+ TRT
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI---PSLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYR-----KKLQAERRTTRT

Query:  R--SCRTLIPANRVVLYNGILKERSQRIECSF
        R  +CR  IPANRV LYNGILK+RSQRI+CSF
Subjt:  R--SCRTLIPANRVVLYNGILKERSQRIECSF

TrEMBL top hitse value%identityAlignment
A0A1S3BY99 uncharacterized protein LOC1034947037.5e-3064.18Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHH------IIHPIPSLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKK------LQAERR
        M SI+ S+G +IATAMVVSSTALFLAFS+HH      II P  SLLPS FSS      E+ K KKKKKVRFAEDVKEP+GNGEEYR++      L  E R
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHH------IIHPIPSLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKK------LQAERR

Query:  TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF
          R  SCR  IPANR+ LYNGILK+RSQRI+CSF
Subjt:  TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF

A0A6J1GAK8 uncharacterized protein LOC111452283 isoform X14.4e-3065.93Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK---KKVRFAEDVKEPRGNGEEYRKK-----LQAERR---
        M SI+ S+G +IATAMVVSSTALFLAFS HH I P PS  L  S  SS  KKRE+NKNK K   KKVRFAEDVKEPRGNGEEYRK+       AERR   
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS-LLPSSFSSSGSKKREQNKNKKK---KKVRFAEDVKEPRGNGEEYRKK-----LQAERR---

Query:  -TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF
         +T TRSC+   PAN++ LYNGILK+RSQRI+CSF
Subjt:  -TTRTRSCRTLIPANRVVLYNGILKERSQRIECSF

A0A6J1GVB7 uncharacterized protein LOC1114577564.9e-2965.12Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIP--SLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKK-----LQAERRTTRTR
        M SI+ S+G +IATAMVVSSTALFLAFS HH I+P+P  SLL S FSS   +K ++ K KKKKKVRFAEDVKEP+GNGEEYR++       AERRT+ + 
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIP--SLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKK-----LQAERRTTRTR

Query:  SCRTLIPANRVVLYNGILKERSQRIECSF
         CR  IPANRV LYNGILK+RS R +CSF
Subjt:  SCRTLIPANRVVLYNGILKERSQRIECSF

A0A6J1IWF1 uncharacterized protein LOC1114791848.3e-2965.65Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS--LLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKKL-----QAERRTTRTR
        M SI+ S+G +IATAMVVSSTALFLAFS HH I+P+PS  LL S FSS   KK    K KKKKKVRFAEDVKEP+GNGEEYR++       AERR T T 
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPS--LLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKKL-----QAERRTTRTR

Query:  S--CRTLIPANRVVLYNGILKERSQRIECSF
        S  CR  IPANRV LYNG+LK+RS R +CSF
Subjt:  S--CRTLIPANRVVLYNGILKERSQRIECSF

A0A6J1K8H4 uncharacterized protein LOC1114932075.7e-3065.41Show/hide
Query:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI--PSLLPSSFSSSGSKK-REQNKNKKK-KKVRFAEDVKEPRGNGEEYRKK-------LQAERRT
        M SI+ S+G +IATAMVVSSTALFLAFS HH I P    SLL S  SS   K+ + QNKNKKK KKVRFAEDVKEPRGNGEEYRK+        +  RRT
Subjt:  MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI--PSLLPSSFSSSGSKK-REQNKNKKK-KKVRFAEDVKEPRGNGEEYRKK-------LQAERRT

Query:  TRTRSCRTLIPANRVVLYNGILKERSQRIECSF
        T TRSC+   PAN++ LYNGILK+RSQRI+CSF
Subjt:  TRTRSCRTLIPANRVVLYNGILKERSQRIECSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52565.1 unknown protein2.0e-1949.23Show/hide
Query:  CSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI--PSLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKKL------QAERRTTRTR
        C +  S G +IATAMV SSTALFLA S     +      +L S  SS   KK+ +N   KKKKV+FAE+VKE +GNGEEYRKK       +   +  +T 
Subjt:  CSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPI--PSLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKKL------QAERRTTRTR

Query:  S-CRTLIPANRVVLYNGILKERSQRIECSF
        S CR  +PANR+ LYNGIL++R  RI+CS+
Subjt:  S-CRTLIPANRVVLYNGILKERSQRIECSF

AT3G15760.1 unknown protein2.8e-1343.31Show/hide
Query:  LIATAMVVSSTALFLAFSHH-HIIHPIPSLLPSS----FSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKKLQAERRTT--------RTRS-CR
        +IATAMV SSTALFLA +   H  H  P +L  +      S  S +  + + KK KKVRFA++VK+ +GNGEEYR++ +  R++         +T S CR
Subjt:  LIATAMVVSSTALFLAFSHH-HIIHPIPSLLPSS----FSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKKLQAERRTT--------RTRS-CR

Query:  -TLIPANRVVLYNGILKERSQRIECSF
         + +PANR+ LYNGIL++R  R++ S+
Subjt:  -TLIPANRVVLYNGILKERSQRIECSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTCCATTGTAAGGTCTGAAGGTTTCTTGATTGCAACGGCCATGGTCGTCTCCTCCACTGCTCTGTTTCTCGCCTTCTCCCATCACCACATCATCCATCCTATTCC
TTCCCTTCTCCCTTCTTCCTTCTCTTCTTCTGGTAGTAAAAAGAGAGAACAAAACAAGAACAAGAAGAAAAAGAAGGTGAGATTTGCAGAGGATGTGAAGGAGCCAAGAG
GAAATGGAGAAGAATACAGAAAAAAGCTTCAAGCAGAAAGAAGAACAACAAGAACAAGAAGCTGTAGAACCCTAATTCCTGCAAATCGAGTTGTTTTGTACAATGGAATC
CTTAAAGAACGATCGCAGAGGATTGAATGTTCATTCTAA
mRNA sequenceShow/hide mRNA sequence
GTCAAAATTCAAAAGAAAGAACTTTGGGGTTCCATTTTCCTCTTTGATCGTGTTGTGTTGTGTTGAGTTGAGGTCCGCCATGTGTTCCATTGTAAGGTCTGAAGGTTTCT
TGATTGCAACGGCCATGGTCGTCTCCTCCACTGCTCTGTTTCTCGCCTTCTCCCATCACCACATCATCCATCCTATTCCTTCCCTTCTCCCTTCTTCCTTCTCTTCTTCT
GGTAGTAAAAAGAGAGAACAAAACAAGAACAAGAAGAAAAAGAAGGTGAGATTTGCAGAGGATGTGAAGGAGCCAAGAGGAAATGGAGAAGAATACAGAAAAAAGCTTCA
AGCAGAAAGAAGAACAACAAGAACAAGAAGCTGTAGAACCCTAATTCCTGCAAATCGAGTTGTTTTGTACAATGGAATCCTTAAAGAACGATCGCAGAGGATTGAATGTT
CATTCTAATCAAAGTTCTTGTTTCATCTGTTTATGAGAAAATGAGAAAAATCTTGTTTTTTG
Protein sequenceShow/hide protein sequence
MCSIVRSEGFLIATAMVVSSTALFLAFSHHHIIHPIPSLLPSSFSSSGSKKREQNKNKKKKKVRFAEDVKEPRGNGEEYRKKLQAERRTTRTRSCRTLIPANRVVLYNGI
LKERSQRIECSF