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Sed0016124 (gene) of Chayote v1 genome

Gene IDSed0016124
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG09:6548301..6548717
RNA-Seq ExpressionSed0016124
SyntenySed0016124
Gene Ontology termsGO:0009059 - macromolecule biosynthetic process (biological process)
GO:0010467 - gene expression (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044271 - cellular nitrogen compound biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]6.6e-3767.16Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVH
        +   KF++EKFDGR+NFG+WQVQVKDVLIQSGLHKALK RP+   S+K + D   +E    SSK S+KS +SD+EWEELD++AAS IRL LAKNVLANV 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVH

Query:  GISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        G+S  KELW+KLE +YQ KSISNRLYLKEQF+ L
Subjt:  GISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]5.1e-3766.92Show/hide
Query:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHG
        S ++FDVEK+DGR+NFGLWQVQVKDVLIQSGLHKAL+G+P+   SK SSG                 S   D+EWE+LDLRAASAIRL LAKNVLANVHG
Subjt:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHG

Query:  ISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        IS AK+LW+KLE +YQ K I NRLYLKEQF+TL
Subjt:  ISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

KAF7802225.1 cytochrome p450 [Senna tora]1.9e-3968.84Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL
        M+ F S+VKFDVEKFDGR+NFGLWQVQVKDVLIQSGLHKAL+G+ S  DS+KS                  +S+MSD +WEELDLRAAS IRL+LAKNVL
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL

Query:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        ANV GIS AKELWKKLE +YQAK ISN L LKEQF+TL
Subjt:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

KAF7810708.1 cytochrome p450 [Senna tora]6.0e-3867.39Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL
        M+ F S++KFDVEKFDGR+NFG WQVQVKDVLIQSGL KAL+G+ S  DS+KS                  +S+MSD +WEELDLRAAS IRL LAKNVL
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL

Query:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        ANV GIS AKELWKKLE +YQAK ISNRL LKEQF+TL
Subjt:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.7e-4878.99Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G S+K S DGG  ESSGGSS+GSKKS+MS ++WEE+DLRAASAIR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL

Query:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        ANVH IS AKELW+KLEA+YQAK ISNRLYLKEQF+TL
Subjt:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein2.5e-3462.96Show/hide
Query:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANV
        +M   KF++EKFDGR+NFGLWQVQVKDVLIQSGLHKALK RP       +SG G        SS+ S+KS +SD+EWEELD++  S IRL LAK VL NV
Subjt:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANV

Query:  HGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
         G+S  K+LW+KLE +YQ KSISNRLYLKEQF+ L
Subjt:  HGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

A0A6A3BK59 CCHC-type domain-containing protein2.0e-3465.15Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    SS    KS MS++EWEELD+RAAS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHGI

Query:  SIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        S  KELW+KLE MYQAKS+SNRLYLKE+F+ L
Subjt:  SIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

A0A6A3CWI3 CCHC-type domain-containing protein2.0e-3465.15Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    SS    KS MS++EWEELD+RAAS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHGI

Query:  SIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        S  KELW+KLE MYQAKS+SNRLYLKE+F+ L
Subjt:  SIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

A0A6A3DA47 CCHC-type domain-containing protein4.3e-3465.15Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    SS    KS MS++EWEELD+RAAS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHGI

Query:  SIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        S  KELW+KLE MYQAKS+SNRLYLKE+F+ L
Subjt:  SIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

A0A6J1CG82 uncharacterized protein LOC1110105218.2e-4978.99Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G S+K S DGG  ESSGGSS+GSKKS+MS ++WEE+DLRAASAIR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVL

Query:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
        ANVH IS AKELW+KLEA+YQAK ISNRLYLKEQF+TL
Subjt:  ANVHGISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-1839.55Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVH
        MS VK++V KF+G   F  WQ +++D+LIQ GLHK L       DSK                   K   M  ++W +LD RAASAIRL+L+ +V+ N+ 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVH

Query:  GISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL
            A+ +W +LE++Y +K+++N+LYLK+Q Y L
Subjt:  GISIAKELWKKLEAMYQAKSISNRLYLKEQFYTL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTTTATGAGTTCGGTGAAGTTTGATGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATT
ACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTAAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCA
ACATGAGTGATGACGAATGGGAGGAATTGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAATAGCCAAA
GAGCTTTGGAAGAAGCTTGAAGCGATGTATCAGGCAAAGAGCATTTCAAATCGGTTGTACCTAAAGGAGCAATTTTACACATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTTTATGAGTTCGGTGAAGTTTGATGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATT
ACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTAAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCA
ACATGAGTGATGACGAATGGGAGGAATTGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAATAGCCAAA
GAGCTTTGGAAGAAGCTTGAAGCGATGTATCAGGCAAAGAGCATTTCAAATCGGTTGTACCTAAAGGAGCAATTTTACACATTGTGA
Protein sequenceShow/hide protein sequence
MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSKKSSGDGGSTESSGGSSKGSKKSNMSDDEWEELDLRAASAIRLNLAKNVLANVHGISIAK
ELWKKLEAMYQAKSISNRLYLKEQFYTL