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Sed0016125 (gene) of Chayote v1 genome

Gene IDSed0016125
OrganismSechium edule (Chayote v1)
DescriptionMitochondrial
Genome locationLG13:21111225..21113069
RNA-Seq ExpressionSed0016125
SyntenySed0016125
Gene Ontology termsGO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591283.1 hypothetical protein SDJN03_13629, partial [Cucurbita argyrosperma subsp. sororia]2.8e-0583.87Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
        LIVKRRTDD PPQIAVTFVNG++E+FD TST
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-0581.82Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHS
        LIVKRRTDD PPQIAVTFVNG++E+FD TST S
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHS
XP_004147839.1 uncharacterized protein LOC101217531 [Cucumis sativus]2.8e-0583.87Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
        LIVKRRTDD PPQIAVTFVNG++E+FD TST
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]7.3e-0687.1Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
        LIVKRRTDDQPPQIAVTFVNG++E+FD TST
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
XP_023536065.1 uncharacterized protein LOC111797318 [Cucurbita pepo subsp. pepo]2.8e-0583.87Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
        LIVKRRTDD PPQIAVTFVNG++E+FD TST
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
TrEMBL top hitse value%identityAlignment
A0A0A0LGG5 Uncharacterized protein1.3e-0583.87Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
        LIVKRRTDD PPQIAVTFVNG++E+FD TST
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
A0A5J5AFV5 Uncharacterized protein3.0e-0571.43Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHSGS
        ++VKRRTDD PPQIAVTFVNG++E+FD TST + S
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHSGS
A0A6J1CC86 uncharacterized protein LOC1110102103.5e-0687.1Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
        LIVKRRTDDQPPQIAVTFVNG++E+FD TST
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
A0A6J1F8W0 uncharacterized protein LOC1114431812.3e-0578.79Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHS
        LIVKRRTDD PPQIAV FVNG++E+FD TST S
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHS
A0A6J1IZE5 uncharacterized protein LOC1114812791.3e-0583.87Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
        LIVKRRTDD PPQIAVTFVNG++E+FD TST
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).3.2e-0762.86Show/hide
Query:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHSGS
        ++VKRRTD+QPPQI VTFVNG++E FD  +T + S
Subjt:  LIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHSGS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATCGTCAAGCGCCGAACCGACGACCAGCCGCCGCAGATCGCCGTCACCTTCGTCAACGGAATCCAAGAGATTTTCGACGATACCTCTACTCACTCCGGCTCAAA
CAACCCGGAACATGATTCTCGAAAACGATGGAGAAACTTGGCCGGTCGTCATTCCCGACGATGA
mRNA sequenceShow/hide mRNA sequence
GGTGAACCAAATACGGGTTTGGTTTTGAATTTCAAACCAACTCAGATTAAACCCTAGCCATCGATAACGATTTTAACAACTCTAGCAATCTAATAGTGTAATGTTGATCG
TCAAGCGCCGAACCGACGACCAGCCGCCGCAGATCGCCGTCACCTTCGTCAACGGAATCCAAGAGATTTTCGACGATACCTCTACTCACTCCGGCTCAAACAACCCGGAA
CATGATTCTCGAAAACGATGGAGAAACTTGGCCGGTCGTCATTCCCGACGATGAGCTTAATCAACCCCCTCCCAGTATCAAGCCTAGAAAAGAGGAAGAGAAGCAATAAC
ATTTTGTCTCAGTTGATCAAATTATGGACACCTGAAAGAGAGTGAGTACTATCAATAATGGAATCACTTCCCTTGAAGTAGAAAGCAATGATTCTGATATGTTTTTTGTC
CTACATTTCTGTTTGCCAGTCTTGCTGTGTATTCTTAGATGTGAGAAACTTCTAAATATGGTG
Protein sequenceShow/hide protein sequence
MLIVKRRTDDQPPQIAVTFVNGIQEIFDDTSTHSGSNNPEHDSRKRWRNLAGRHSRR