; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016183 (gene) of Chayote v1 genome

Gene IDSed0016183
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG06:26269623..26270243
RNA-Seq ExpressionSed0016183
SyntenySed0016183
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054121.1 hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa]9.0e-3045.66Show/hide
Query:  MDEERKRKKSS-RKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLE-----------KLKTTSS
        M+EE++R+KSS    KKKR K +FEWS+ EEL LLKKLVEF++  I+ EE YPFLRNG SLAE SKI+IF KIQ+LK +YLE            +K    
Subjt:  MDEERKRKKSS-RKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLE-----------KLKTTSS

Query:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ
        ++  + RDE FELS  +W           E  +  R+  S++L      +Y    EG  ES GL++ LF PSF + TK     LF+L +H  L+K+ LT 
Subjt:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ

Query:  QIAQLKYNVSQ-KFLNPTN
        QI QLKY++ Q +  NPTN
Subjt:  QIAQLKYNVSQ-KFLNPTN

KAG6585881.1 hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sororia]3.1e-3044.98Show/hide
Query:  RKRKK--SSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEKLKT-----TSSNEEEEIRDE
        RKRK        ++K++K +F+WS+ EEL LL KLVEFS N + HE+ YPFLR+G SLA+  KI+IF KIQ+LK+K+LEKL++     + +++E   RDE
Subjt:  RKRKK--SSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEKLKT-----TSSNEEEEIRDE

Query:  CFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQQIAQLKYNV
         FELS  +W      T T           ++ S S A D W M   E L E   L L+ FTPSFL+ TK +  +L  L NHH L K+NL  Q+AQLK+++
Subjt:  CFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQQIAQLKYNV

Query:  SQ-KFLNPT
        +Q +F N T
Subjt:  SQ-KFLNPT

KGN49711.1 hypothetical protein Csa_018385 [Cucumis sativus]1.6e-1536.49Show/hide
Query:  MDEERK-RKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEK-----------LKTTSS
        M+E ++ RK+S+   KKKR K +FEWS+ EEL LLKKLVEF+T  I+ EE YPFLRNG SLAE S+ +IF KIQELK++YL++           +K    
Subjt:  MDEERK-RKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEK-----------LKTTSS

Query:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ
        ++    RDE FELS  VW                          G +DE     +  ++E              +  K    +LF+L +  FL KS L  
Subjt:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ

Query:  QIAQLKYNVSQ
        ++ +LK ++ Q
Subjt:  QIAQLKYNVSQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPQ5 Uncharacterized protein8.0e-1636.49Show/hide
Query:  MDEERK-RKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEK-----------LKTTSS
        M+E ++ RK+S+   KKKR K +FEWS+ EEL LLKKLVEF+T  I+ EE YPFLRNG SLAE S+ +IF KIQELK++YL++           +K    
Subjt:  MDEERK-RKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEK-----------LKTTSS

Query:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ
        ++    RDE FELS  VW                          G +DE     +  ++E              +  K    +LF+L +  FL KS L  
Subjt:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ

Query:  QIAQLKYNVSQ
        ++ +LK ++ Q
Subjt:  QIAQLKYNVSQ

A0A5A7UKP8 Uncharacterized protein4.4e-3045.66Show/hide
Query:  MDEERKRKKSS-RKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLE-----------KLKTTSS
        M+EE++R+KSS    KKKR K +FEWS+ EEL LLKKLVEF++  I+ EE YPFLRNG SLAE SKI+IF KIQ+LK +YLE            +K    
Subjt:  MDEERKRKKSS-RKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLE-----------KLKTTSS

Query:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ
        ++  + RDE FELS  +W           E  +  R+  S++L      +Y    EG  ES GL++ LF PSF + TK     LF+L +H  L+K+ LT 
Subjt:  NEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQ

Query:  QIAQLKYNVSQ-KFLNPTN
        QI QLKY++ Q +  NPTN
Subjt:  QIAQLKYNVSQ-KFLNPTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAAGAAAGAAAGAGAAAAAAAAGTTCAAGGAAACGAAAGAAAAAGAGAAGTAAGGAAGTGTTTGAGTGGAGTCAAATGGAAGAGTTGAAGCTACTAAAGAAGTT
GGTTGAGTTCAGTACGAATGGTATAGCCCACGAAGAACTATACCCGTTTTTGAGAAACGGGACCTCGTTAGCTGAGGCGTCGAAGATTGAAATATTCCACAAAATTCAAG
AGCTGAAAAAGAAATATTTGGAGAAATTAAAGACGACGAGTAGTAATGAAGAAGAAGAGATTAGGGATGAGTGTTTTGAATTATCAAAGGTGGTTTGGATGAGTGAAACA
ACGACGACAACAACAACAACAGAAACAAGTCAAAGAAGAAGAAGTATAAGGAGTGAATCGTTGTCAGGTGCAATTGATGAATGGTATATGGACTGTTTGGAAGGGTTGGT
TGAAAGTGAAGGGCTTGAATTGAATCTATTCACCCCATCTTTTTTGGAGCAAACCAAGGACAAGGCCCATCAATTGTTTCATCTTCATAATCACCATTTCTTAACCAAAT
CTAACTTGACCCAACAAATTGCTCAACTCAAGTACAATGTCAGTCAAAAGTTTCTAAATCCTACTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGAAGAAAGAAAGAGAAAAAAAAGTTCAAGGAAACGAAAGAAAAAGAGAAGTAAGGAAGTGTTTGAGTGGAGTCAAATGGAAGAGTTGAAGCTACTAAAGAAGTT
GGTTGAGTTCAGTACGAATGGTATAGCCCACGAAGAACTATACCCGTTTTTGAGAAACGGGACCTCGTTAGCTGAGGCGTCGAAGATTGAAATATTCCACAAAATTCAAG
AGCTGAAAAAGAAATATTTGGAGAAATTAAAGACGACGAGTAGTAATGAAGAAGAAGAGATTAGGGATGAGTGTTTTGAATTATCAAAGGTGGTTTGGATGAGTGAAACA
ACGACGACAACAACAACAACAGAAACAAGTCAAAGAAGAAGAAGTATAAGGAGTGAATCGTTGTCAGGTGCAATTGATGAATGGTATATGGACTGTTTGGAAGGGTTGGT
TGAAAGTGAAGGGCTTGAATTGAATCTATTCACCCCATCTTTTTTGGAGCAAACCAAGGACAAGGCCCATCAATTGTTTCATCTTCATAATCACCATTTCTTAACCAAAT
CTAACTTGACCCAACAAATTGCTCAACTCAAGTACAATGTCAGTCAAAAGTTTCTAAATCCTACTAATTAG
Protein sequenceShow/hide protein sequence
MDEERKRKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEKLKTTSSNEEEEIRDECFELSKVVWMSET
TTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQQIAQLKYNVSQKFLNPTN