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Sed0016203 (gene) of Chayote v1 genome

Gene IDSed0016203
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich cell wall structural protein 2
Genome locationLG13:1974566..1975350
RNA-Seq ExpressionSed0016203
SyntenySed0016203
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146895.1 glycine-rich cell wall structural protein 2 [Cucumis sativus]1.7e-3968.39Show/hide
Query:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWGP----NGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYG
        MK+PS F    LFFLLF +T+SS VS G   RKLLNFPDMSWG      G G+G+PTG YGS HGPNWDYNWGWGSSPGSGWG+GSGSG SPTGFGKGYG
Subjt:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWGP----NGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYG

Query:  YGFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK
        YGFGS    GSGSGSG G+GSGSG   GGGYGSG GY NS GGG GG G G     G + +EYRSP  TRDK++
Subjt:  YGFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK

XP_016901488.1 PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo]6.0e-4069.36Show/hide
Query:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWG-PN--GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY
        MK+PS F    LFFLLF +T+SS VSG    RKLLNFPDMSWG PN  G G+G+PTG YGS H PNWDYNWGWGSSPGSGWG+GSGSG SPTGFGKGYGY
Subjt:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWG-PN--GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY

Query:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK
        GFGS    GSGSGSG G+GSGSG   GGGYGSG GY NS GGG GG G G     G + +EYRSP+ TRDK++
Subjt:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK

XP_022141166.1 putative glycine-rich cell wall structural protein 1 [Momordica charantia]1.2e-4070.22Show/hide
Query:  MKKPSTF---LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNG---DGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYG
        MKK STF   L FLLFFIT SSA SG    RKLLNFPDMSWGP+G   +G G+P G YGSAHGPNWDYNWGWGSSPGSGWG+GSGSG SPTGFGKGYGYG
Subjt:  MKKPSTF---LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNG---DGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYG

Query:  FGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNS----SGGGYGGSGSGEHDGSGGNDNEYRSPSATRD-KSKH
        FGS    GSGSGSG G+GSGSG   GGGYG G GY NS    +GGGY G G G + GSGG  NEYRS + T+D +SKH
Subjt:  FGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNS----SGGGYGGSGSGEHDGSGGNDNEYRSPSATRD-KSKH

XP_022922583.1 glycine-rich cell wall structural protein 2-like [Cucurbita moschata]2.3e-3969.71Show/hide
Query:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYGFG
        MKKPS F    LFFLLFFITASSAV G    RKLLN PDM WG + +G G+PTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSG SPTGFGKGYGYGFG
Subjt:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYGFG

Query:  SGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNS----SGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSKH
        S    GSGSGSG G+GSG G   GGGYGSG GY NS     GGGYGGS  G +  S G   EY   + T+DKS+H
Subjt:  SGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNS----SGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSKH

XP_038899364.1 glycine-rich cell wall structural protein 2-like [Benincasa hispida]4.6e-4071.1Show/hide
Query:  MKKPSTF----LFFLLFFITA-SSAVSGGVISRKLLNFPDMSWG-PN-GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY
        MKKPSTF    LFFLLF +TA SS VSG   +RKLLNFPDMSWG PN G G G+PTG YGSAHGPNWDYNWGWGSSPGSGWGYGSGSG SPTGFGKGYGY
Subjt:  MKKPSTF----LFFLLFFITA-SSAVSGGVISRKLLNFPDMSWG-PN-GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY

Query:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK
        G+G     GSGSGSG G+GSGSG   GGGYGSG GY NS G G GG G G     G N  EYRSP+ T+DK++
Subjt:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK

TrEMBL top hitse value%identityAlignment
A0A0A0KXP2 Uncharacterized protein8.4e-4068.39Show/hide
Query:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWGP----NGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYG
        MK+PS F    LFFLLF +T+SS VS G   RKLLNFPDMSWG      G G+G+PTG YGS HGPNWDYNWGWGSSPGSGWG+GSGSG SPTGFGKGYG
Subjt:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWGP----NGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYG

Query:  YGFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK
        YGFGS    GSGSGSG G+GSGSG   GGGYGSG GY NS GGG GG G G     G + +EYRSP  TRDK++
Subjt:  YGFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK

A0A1S4DZT0 glycine-rich cell wall structural protein 22.9e-4069.36Show/hide
Query:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWG-PN--GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY
        MK+PS F    LFFLLF +T+SS VSG    RKLLNFPDMSWG PN  G G+G+PTG YGS H PNWDYNWGWGSSPGSGWG+GSGSG SPTGFGKGYGY
Subjt:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWG-PN--GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY

Query:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK
        GFGS    GSGSGSG G+GSGSG   GGGYGSG GY NS GGG GG G G     G + +EYRSP+ TRDK++
Subjt:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK

A0A5A7TRC6 Glycine-rich cell wall structural protein 22.9e-4069.36Show/hide
Query:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWG-PN--GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY
        MK+PS F    LFFLLF +T+SS VSG    RKLLNFPDMSWG PN  G G+G+PTG YGS H PNWDYNWGWGSSPGSGWG+GSGSG SPTGFGKGYGY
Subjt:  MKKPSTF----LFFLLFFITASSAVSGGVISRKLLNFPDMSWG-PN--GDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGY

Query:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK
        GFGS    GSGSGSG G+GSGSG   GGGYGSG GY NS GGG GG G G     G + +EYRSP+ TRDK++
Subjt:  GFGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK

A0A6J1CI83 putative glycine-rich cell wall structural protein 15.8e-4170.22Show/hide
Query:  MKKPSTF---LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNG---DGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYG
        MKK STF   L FLLFFIT SSA SG    RKLLNFPDMSWGP+G   +G G+P G YGSAHGPNWDYNWGWGSSPGSGWG+GSGSG SPTGFGKGYGYG
Subjt:  MKKPSTF---LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNG---DGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYG

Query:  FGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNS----SGGGYGGSGSGEHDGSGGNDNEYRSPSATRD-KSKH
        FGS    GSGSGSG G+GSGSG   GGGYG G GY NS    +GGGY G G G + GSGG  NEYRS + T+D +SKH
Subjt:  FGSGSRMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNS----SGGGYGGSGSGEHDGSGGNDNEYRSPSATRD-KSKH

A0A6J1J8K0 glycine-rich cell wall structural protein 2-like1.1e-3970.66Show/hide
Query:  MKKPSTF-LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYGFGSGS
        MKKPSTF L FLL FITASSA+S    SRKLLNFP MSWGPNG+G G+PTGGYGS+HGPNW+YNWGWGSSPGSGWGYGSGSG S  GFGKGYGYGFGS  
Subjt:  MKKPSTF-LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYGFGSGS

Query:  RMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK
          GSGSGSG G+GSG G   GGGYG G GY NS G G GG G     GS     EYRS + + DKSK
Subjt:  RMGSGSGSGSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G61660.1 glycine-rich protein1.4e-1551.82Show/hide
Query:  LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYGFGSGSRMGSGSGS
        L    F ITA ++VS                 P     G+  G  GS  GPNW+YNWGWGS+PGSGWGYG+GSG SPTG+G+G GYG+GS    GSGSG+
Subjt:  LFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYGFGSGSRMGSGSGS

Query:  GSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGE
        G G+GSG G   GGGYG G G   S GGG GG  +GE
Subjt:  GSGWGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAACCATCCACATTTCTCTTCTTCCTTCTCTTTTTCATCACAGCTTCCTCCGCCGTGAGCGGCGGCGTTATCAGCCGGAAACTGCTCAACTTCCCAGACATGTC
TTGGGGACCCAATGGAGATGGAAGTGGGAGCCCCACTGGGGGCTATGGCTCAGCCCATGGTCCCAATTGGGACTACAATTGGGGTTGGGGTTCAAGCCCCGGGAGTGGCT
GGGGTTACGGTTCGGGCTCTGGCCACTCCCCAACCGGGTTTGGAAAAGGTTATGGATACGGATTTGGATCGGGATCGAGAATGGGGTCAGGGTCAGGGTCAGGGTCAGGG
TGGGGCTCGGGATCAGGATATGGAAGTGGGGGTGGATATGGGTCCGGAGGAGGCTACGACAATTCTAGCGGTGGTGGATATGGTGGTTCGGGTAGCGGTGAGCACGACGG
TTCAGGTGGCAACGACAACGAGTATCGGTCGCCATCGGCTACGAGAGACAAAAGCAAGCATGTGTAG
mRNA sequenceShow/hide mRNA sequence
CCATCAACCAAAATCATAATTTCAAATTTCTCTCTTTCTCTTTTATCTCAAATCCCCAATAAAGATATGAAAAAACCATCCACATTTCTCTTCTTCCTTCTCTTTTTCAT
CACAGCTTCCTCCGCCGTGAGCGGCGGCGTTATCAGCCGGAAACTGCTCAACTTCCCAGACATGTCTTGGGGACCCAATGGAGATGGAAGTGGGAGCCCCACTGGGGGCT
ATGGCTCAGCCCATGGTCCCAATTGGGACTACAATTGGGGTTGGGGTTCAAGCCCCGGGAGTGGCTGGGGTTACGGTTCGGGCTCTGGCCACTCCCCAACCGGGTTTGGA
AAAGGTTATGGATACGGATTTGGATCGGGATCGAGAATGGGGTCAGGGTCAGGGTCAGGGTCAGGGTGGGGCTCGGGATCAGGATATGGAAGTGGGGGTGGATATGGGTC
CGGAGGAGGCTACGACAATTCTAGCGGTGGTGGATATGGTGGTTCGGGTAGCGGTGAGCACGACGGTTCAGGTGGCAACGACAACGAGTATCGGTCGCCATCGGCTACGA
GAGACAAAAGCAAGCATGTGTAGTAAAAATGTAATAGTTGTGTTATAAGCTATAGTTGCATTAAACATGTGAGGATGTATGGACGTTAGCCCCTAGCTAGCTTTAATATC
TCTATAATATGGTTTGAATAAGCCAATTGCTTAAGGTTTGCCCATATATCTATGAGTCTGAGACTTATAATTCTATCATAGTGTGTATTATATAGCTTTTTAATGAGACT
AAATTAGAATCCTTA
Protein sequenceShow/hide protein sequence
MKKPSTFLFFLLFFITASSAVSGGVISRKLLNFPDMSWGPNGDGSGSPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGHSPTGFGKGYGYGFGSGSRMGSGSGSGSG
WGSGSGYGSGGGYGSGGGYDNSSGGGYGGSGSGEHDGSGGNDNEYRSPSATRDKSKHV