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Sed0016248 (gene) of Chayote v1 genome

Gene IDSed0016248
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG09:37874039..37874230
RNA-Seq ExpressionSed0016248
SyntenySed0016248
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-1690.48Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA++ N
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_022933008.1 arabinogalactan peptide 23-like [Cucurbita moschata]1.5e-1588.89Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY+ N
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]6.6e-1688.89Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAAT++AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA++ N
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.0e-1692.06Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY+ N
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]8.6e-1688.89Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAA VS+ VA+DESLSPAAAPGPSSAASAALPALGSLVGASLV+FVAYFLN
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like9.0e-1179.69Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFV-AYFLN
        MEMKK ACAAL AAA VSA VA+DES+SPAAAPGPSSAASAALP L    GAS+VSFV AYFLN
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFV-AYFLN
A0A6J1F3F5 arabinogalactan peptide 23-like7.1e-1688.89Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY+ N
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
A0A6J1H8I1 arabinogalactan peptide 23-like3.2e-1688.89Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAAT++AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA++ N
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
A0A6J1IYE9 arabinogalactan peptide 23-like5.1e-1484.13Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMK  AC AL  AA V+AVVASDES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY LN
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
A0A6J1KX42 arabinogalactan peptide 23-like4.9e-1792.06Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY+ N
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.5e-1066.67Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK AC  L AAA+++AV+A++E  +P  APGP+SAASAALPALGSLVGASLVS  +Y+L+
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.1e-0860.94Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK AC  + AAA+++AV+A++     A APGP +S AS A+PALGSLVGASLVS  AY+LN
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVAYFLN
AT3G57690.1 arabinogalactan protein 231.0e-1166.67Show/hide
Query:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKK AC  L AAA+++AV+A++E  +P  APGP+SAASAALPALGSLVGASLVS  +Y+L+
Subjt:  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTTGCTTGTGCCGCCCTCCTCGCCGCCGCTACCGTCTCTGCGGTCGTGGCCTCCGATGAGTCTCTCTCCCCGGCTGCTGCACCGGGGCCGAGCAG
CGCCGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTTGCATACTTCTTGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTTGCTTGTGCCGCCCTCCTCGCCGCCGCTACCGTCTCTGCGGTCGTGGCCTCCGATGAGTCTCTCTCCCCGGCTGCTGCACCGGGGCCGAGCAG
CGCCGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTTGCATACTTCTTGAACTGA
Protein sequenceShow/hide protein sequence
MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN