CuGenDBv2

Gene ID	Sed0016266
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	LG05:29235763..29237878
RNA-Seq Expression	Sed0016266
Synteny	Sed0016266
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR009088 - Transcription factor IIA, beta-barrel IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-49

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

KAG7031763.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-49

95.28

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDATFKNEDSQE VG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_022133819.1 transcription initiation factor IIA subunit 2 [Momordica charantia]

5.3e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQENVG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]

2.0e-49

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]

2.6e-49

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDS E+VG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMF8 Transcription initiation factor IIA subunit 2

1.3e-49

95.28

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDA+FKNEDS ENVG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1BWA2 Transcription initiation factor IIA subunit 2

2.5e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQENVG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1FTM1 Transcription initiation factor IIA subunit 2

9.7e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 2

9.7e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VG+IKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

B9SMZ0 Transcription initiation factor IIA subunit 2

1.6e-49

95.28

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDA FKNEDSQENVG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

1.0e-48

89.62

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +A+FKNE++ E VGK+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

B7Q1Q9 Transcription initiation factor IIA subunit 2

2.7e-25

51.49

Show/hide

Query:  TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-GHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACDS
        +++LYR +T+G  L E+LDE++Q G ++P LA++VL+QFDK++  AL ++VK+++T K GHL TYRFCDNVWTF+L+D  F+         K+KIVACD 
Subjt:  TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-GHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACDS

Query:  K
        K
Subjt:  K

O74948 Transcription initiation factor IIA subunit 2

1.9e-26

53.54

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Query:  FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL TYRFCD VWTFI+++ +F+ ++      KI+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 2

1.0e-48

89.62

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Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +A+FKNE++ E VGK+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 2

1.6e-49

90.57

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D QENV ++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

1.1e-50

90.57

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D QENV ++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

1.1e-50

90.57

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D QENV ++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAGCGGTACTCTTAGTCCTGAGCTTGCTATTCAGGT
TCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAAGTGACTATCAAGGGACATTTGCACACTTATCGGTTCTGCGACAACGTGTGGA
CATTCATTTTGCAGGACGCGACGTTTAAGAACGAGGATTCTCAAGAGAATGTTGGAAAAATTAAAATAGTTGCATGCGACTCGAAGTTACTTTCACAATAA

mRNA sequence

Show/hide mRNA sequence

CAAATTTCTTCGCTCGCAAAAAGCTTTGGAGCCAACGTTCACCCAGTAAGAATCAAGAAACCAGAAGCATCACAAAATCGCAACAATCTGTAGCAACAATTCATCTTGTT
TTTCGAAGAAGAATGGCAACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAGCGGTACTCTTAGTCCTGAGCT
TGCTATTCAGGTTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAAGTGACTATCAAGGGACATTTGCACACTTATCGGTTCTGCG
ACAACGTGTGGACATTCATTTTGCAGGACGCGACGTTTAAGAACGAGGATTCTCAAGAGAATGTTGGAAAAATTAAAATAGTTGCATGCGACTCGAAGTTACTTTCACAA
TAAGCTTTTCCAGATATCAGTTTATTAGATGAAATTTGCATATTTATTTGCTGACGATCGAAGGAAATAGTCACAGTGAGCCGTGAGGTAATGAGCCATCAAAGGCAAGA
GAGTTAATTTCAAACGTGATTCTGTAAAGTCATCGACCTGAACAGCAGAGTTAATTTCACGCACATTGACATTACATTTGATACAACCCTCCTAGTTTTAATGATAATAA
AACATGAAGTGTCCGTTTTATTATTCATGTCTTCATTTCCATAAGTTTCTTTTGAACTTAAAACGTGCCATGAACTGCAAG

Protein sequence

Show/hide protein sequence

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGKIKIVACDSKLLSQ

Sed0016266 (gene) of Chayote v1 genome