CuGenDBv2

Gene ID	Sed0016292
Organism	Sechium edule (Chayote v1)
Description	UBA domain-containing protein
Genome location	LG01:64282649..64285765
RNA-Seq Expression	Sed0016292
Synteny	Sed0016292
Gene Ontology terms	GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (biological process) GO:0000813 - ESCRT I complex (cellular component) GO:0043130 - ubiquitin binding (molecular function)
InterPro domains	IPR009060 - UBA-like superfamily IPR038870 - Ubiquitin-associated protein 1 IPR042575 - Ubiquitin-associated protein 1, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605766.1 Ubiquitin-conjugating enzyme E2 10, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-93

80.89

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ
        MAYDYR N  G++NA PPMYGP ASSS      PMY Q MYPRIGQQGHSPAPPVAR+S            SSPSSSGLGIRV IKPEYRITPPP L PQ
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ

Query:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS
        VGDIPRSNFQFDFEFEKKVLAEAEKETP+WNRFGLEHPP +PVES+SSMGS GDPV+SKYVA GLSREAVSLAV+NYGD+PTKVQEFVKGYTLLREMGF 
Subjt:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS

Query:  SDKVVEALLMYDNDTDKVVAHFLGG
        S+KVVEALLMYDNDTDK VAHFLGG
Subjt:  SDKVVEALLMYDNDTDKVVAHFLGG

KAG7035731.1 hypothetical protein SDJN02_02529 [Cucurbita argyrosperma subsp. argyrosperma]

3.1e-94

81.06

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ
        MAYDYR N  G++NA PPMYGP ASSS      PMY Q MYPRIGQQGHSPAPPVAR+S            SSPSSSGLGIRV IKPEYRITPPP L PQ
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ

Query:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS
        VGDIPRSNFQFDFEFEKKVLAEAEKETP+WNRFGLEHPP +PVES+SSMGS GDPV+SKYVA GLSREAVSLAV+NYGD+PTKVQEFVKGYTLLREMGF 
Subjt:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS

Query:  SDKVVEALLMYDNDTDKVVAHFLGGTS
        S+KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  SDKVVEALLMYDNDTDKVVAHFLGGTS

XP_022958203.1 uncharacterized protein LOC111459499 [Cucurbita moschata]

3.1e-94

81.06

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ
        MAYDYR N  G++NA PPMYGP ASSS      PMY Q MYPRIGQQGHSPAPPVAR+S            SSPSSSGLGIRV IKPEYRITPPP L PQ
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ

Query:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS
        VGDIPRSNFQFDFEFEKKVLAEAEKETP+WNRFGLEHPP +PVES+SSMGS GDPV+SKYVA GLSREAVSLAV+NYGD+PTKVQEFVKGYTLLREMGF 
Subjt:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS

Query:  SDKVVEALLMYDNDTDKVVAHFLGGTS
        S+KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  SDKVVEALLMYDNDTDKVVAHFLGGTS

XP_022995350.1 velvet complex subunit B [Cucurbita maxima]

2.6e-93

80.18

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ
        MAYDYR N  G++NA PPMYGP ASSS      PMY Q MYPRIGQQGHSPAPPV R+S            SSPSSSGLGIRV IKPEYRITPPP L PQ
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ

Query:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS
        VGDIPRSNFQFDFEFEKKVLAEAEKETP+WNRFGLEHPP +PVES+SSMGS GDPV++KYVA GLSREAVSLAV+NYGD+PTKVQEFVKGYTLLREMGF 
Subjt:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS

Query:  SDKVVEALLMYDNDTDKVVAHFLGGTS
        S+KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  SDKVVEALLMYDNDTDKVVAHFLGGTS

XP_023534738.1 uncharacterized protein LOC111796216 [Cucurbita pepo subsp. pepo]

6.9e-94

80.62

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ
        MAYDYR N  G++NA PPMYGP ASSS      PMY Q MYPRIGQQGHSPAPPVAR+S            SSPSSSGLGIRV IKPEYRITPPP L PQ
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ

Query:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS
        VGDIPRSNFQFDFEFEKKVLAEAEKETP+WNRFGLEHPP +PVES+SSMGS GDPV++KYVA GLSREAVSLAV+NYGD+PTKVQEFVKGYTLLREMGF 
Subjt:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS

Query:  SDKVVEALLMYDNDTDKVVAHFLGGTS
        S+KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  SDKVVEALLMYDNDTDKVVAHFLGGTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KNB8 Uncharacterized protein

5.5e-89

79.11

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLSS---------SP-SSSGLGIRVNIKPEYRITPPPHLLPQVG
        MAYD+R NNSGH+++  PMY   ASSS      PMY+  MYPRIGQQ  S  PPVARLSS         SP SSSGLGIRV IKPEYRITPPP L PQVG
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLSS---------SP-SSSGLGIRVNIKPEYRITPPPHLLPQVG

Query:  DIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSD
        DIPRSNFQFDFEFEKKVLAEAEKE P+WNRFGLEHPPPKPVESTSSMGS+GDPV+SKYVA GL+REAVS AV+NYGD+PTKVQEFVKGYTLLREMGFSS 
Subjt:  DIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSD

Query:  KVVEALLMYDNDTDKVVAHFLGGTS
        KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  KVVEALLMYDNDTDKVVAHFLGGTS

A0A1S3AUG0 uncharacterized protein LOC103482940 isoform X1

3.7e-85

77.33

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARL---------SSSP-SSSGLGIRVNIKPEYRITPPPHLLPQVG
        MAYD+R NNSGH+++  PMY   ASS+      PMY+Q MYPRIGQQ  S  PPVARL         SSSP SSSGLGIRV IKPEYRITPPP L PQVG
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARL---------SSSP-SSSGLGIRVNIKPEYRITPPPHLLPQVG

Query:  DIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSD
        DIPRSNF FDFEFEKKVLAEAEKE P+WNRFGLE  PPKPVESTSSMGS+GDP +SKYVA GL+REAVS AV+NYGD+PTKVQEFVKGYTLLREMGFSS 
Subjt:  DIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSD

Query:  KVVEALLMYDNDTDKVVAHFLGGTS
        KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  KVVEALLMYDNDTDKVVAHFLGGTS

A0A1S3AUY5 uncharacterized protein LOC103482940 isoform X3

1.7e-85

77.23

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARL---------SSSPSSSGLGIRVNIKPEYRITPPPHLLPQVGD
        MAYD+R NNSGH+++  PMY   ASS+      PMY+Q MYPRIGQQ  S  PPVARL         SSSPSSS LGIRV IKPEYRITPPP L PQVGD
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARL---------SSSPSSSGLGIRVNIKPEYRITPPPHLLPQVGD

Query:  IPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSDK
        IPRSNF FDFEFEKKVLAEAEKE P+WNRFGLE  PPKPVESTSSMGS+GDP +SKYVA GL+REAVS AV+NYGD+PTKVQEFVKGYTLLREMGFSS K
Subjt:  IPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSDK

Query:  VVEALLMYDNDTDKVVAHFLGGTS
        VVEALLMYDNDTDK VAHFLGGTS
Subjt:  VVEALLMYDNDTDKVVAHFLGGTS

A0A6J1H2H7 uncharacterized protein LOC111459499

1.5e-94

81.06

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ
        MAYDYR N  G++NA PPMYGP ASSS      PMY Q MYPRIGQQGHSPAPPVAR+S            SSPSSSGLGIRV IKPEYRITPPP L PQ
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ

Query:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS
        VGDIPRSNFQFDFEFEKKVLAEAEKETP+WNRFGLEHPP +PVES+SSMGS GDPV+SKYVA GLSREAVSLAV+NYGD+PTKVQEFVKGYTLLREMGF 
Subjt:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS

Query:  SDKVVEALLMYDNDTDKVVAHFLGGTS
        S+KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  SDKVVEALLMYDNDTDKVVAHFLGGTS

A0A6J1K3U0 velvet complex subunit B

1.3e-93

80.18

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ
        MAYDYR N  G++NA PPMYGP ASSS      PMY Q MYPRIGQQGHSPAPPV R+S            SSPSSSGLGIRV IKPEYRITPPP L PQ
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASSS------PMYAQPMYPRIGQQGHSPAPPVARLS------------SSPSSSGLGIRVNIKPEYRITPPPHLLPQ

Query:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS
        VGDIPRSNFQFDFEFEKKVLAEAEKETP+WNRFGLEHPP +PVES+SSMGS GDPV++KYVA GLSREAVSLAV+NYGD+PTKVQEFVKGYTLLREMGF 
Subjt:  VGDIPRSNFQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFS

Query:  SDKVVEALLMYDNDTDKVVAHFLGGTS
        S+KVVEALLMYDNDTDK VAHFLGGTS
Subjt:  SDKVVEALLMYDNDTDKVVAHFLGGTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G53330.1 Ubiquitin-associated/translation elongation factor EF1B protein

1.3e-61

59.01

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Query:  MAYDYRSNNSGHFNAPPPMYGPPASS-SPMYAQPM--YPRIGQQ-GHSP---APPVARLS---SSPSSSGLGIRVNIKPEYRITPPPHLLPQVGDIPRSN
        M YDYR N SG  + P PMYGPP++S SP    PM  YP+IGQQ G  P   +PP    S   ++  SSG+GIRVN+KPEYRITPPP LLP+VGDI RS+
Subjt:  MAYDYRSNNSGHFNAPPPMYGPPASS-SPMYAQPM--YPRIGQQ-GHSP---APPVARLS---SSPSSSGLGIRVNIKPEYRITPPPHLLPQVGDIPRSN

Query:  FQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVE-STSSMGSLG--DPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSDKVV
        FQFDF  E+KVLAEAEK+ PDW++FG E+PP K  E S SS+G +   D V+ KY A GL+REAV++AV+NYGD+PTKVQEF  G+T +REMGF ++ V 
Subjt:  FQFDFEFEKKVLAEAEKETPDWNRFGLEHPPPKPVE-STSSMGSLG--DPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSDKVV

Query:  EALLMYDNDTDKVVAHFLGGTS
        +AL M++NDTDK +AH L G+S
Subjt:  EALLMYDNDTDKVVAHFLGGTS

Sequences

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CDS sequence

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ATGGCGTACGATTACAGAAGCAACAACTCCGGCCACTTCAACGCTCCTCCACCGATGTACGGCCCACCCGCTTCTTCTTCACCCATGTATGCTCAGCCCATGTACCCCAG
GATCGGCCAACAAGGCCATTCACCGGCGCCGCCGGTGGCCCGTCTCTCCTCCTCTCCCTCCTCTTCTGGATTGGGCATTAGGGTTAACATTAAGCCGGAATATCGAATTA
CTCCTCCGCCTCATTTATTGCCACAAGTTGGAGATATTCCTCGGAGCAATTTCCAATTTGATTTTGAGTTTGAGAAAAAGGTTTTGGCTGAAGCAGAGAAAGAAACTCCT
GATTGGAATCGGTTTGGGTTGGAACATCCTCCCCCTAAACCAGTGGAGTCCACATCTTCAATGGGTTCTCTTGGAGATCCAGTTTTGAGCAAGTATGTTGCACCTGGCTT
GAGTCGGGAAGCTGTTTCGTTAGCAGTTTCTAATTATGGAGACGATCCAACCAAGGTTCAAGAATTCGTGAAAGGCTACACGCTCCTACGAGAAATGGGATTTTCATCCG
ACAAGGTGGTCGAGGCGTTACTGATGTATGACAATGACACTGATAAAGTTGTAGCTCATTTTCTTGGCGGAACATCGTAA

mRNA sequence

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Protein sequence

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MAYDYRSNNSGHFNAPPPMYGPPASSSPMYAQPMYPRIGQQGHSPAPPVARLSSSPSSSGLGIRVNIKPEYRITPPPHLLPQVGDIPRSNFQFDFEFEKKVLAEAEKETP
DWNRFGLEHPPPKPVESTSSMGSLGDPVLSKYVAPGLSREAVSLAVSNYGDDPTKVQEFVKGYTLLREMGFSSDKVVEALLMYDNDTDKVVAHFLGGTS

Sed0016292 (gene) of Chayote v1 genome