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Sed0016306 (gene) of Chayote v1 genome

Gene IDSed0016306
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG01:1774507..1775627
RNA-Seq ExpressionSed0016306
SyntenySed0016306
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045689.1 hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa]1.7e-3680.21Show/hide
Query:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW
        MT CYGCKP PSGPLPGPIL+LL VVF+LI LSSLFPSEPID SEFQINWPLLAVPI++LVLVR LSS DSS ++YAC C+RGWKM CRCG G AW
Subjt:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW

KAG6571042.1 hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4084.21Show/hide
Query:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRGAW
        MT CYGCKP PSGPLPGP+L+LL VVF+LIGLSSLFPSEPID SEFQINWPLLAVPI+LLVLVR LS+ DSSS++YAC C+RGWKMQCRCGRGAW
Subjt:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRGAW

KAG6605007.1 hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia]4.6e-3784.21Show/hide
Query:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRGAW
        MT CYG KP PSGPLPGPILVLLTVVF+LIGLSSLF SEPID SEFQINWPLLAVPI++LVLVRFLSS DSSS+H  CACDRGWKM CRC  GAW
Subjt:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRGAW

KGN61893.1 hypothetical protein Csa_006600 [Cucumis sativus]2.7e-3781.25Show/hide
Query:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW
        MT CYGCKP PSGPLPGPIL+LL VVF+LI LSSLFPSEPID SEFQINWPLLAVPI++LVLVR L+S DSS ++YAC CDRGWKM CRCGRG AW
Subjt:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW

PKI78722.1 hypothetical protein CRG98_000947 [Punica granatum]4.0e-0945.05Show/hide
Query:  CYGCK-PPPS-GPLPGPILVLLTVVFLLIGLSSLFPSEPI-DLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYA-CACDRGWKMQCRC
        CY CK PPPS GP+P  +L+ L +  + I LS L   + + +  E  INW LLAVPI++L +V +LSS D   K Y    C R WK  C C
Subjt:  CYGCK-PPPS-GPLPGPILVLLTVVFLLIGLSSLFPSEPI-DLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYA-CACDRGWKMQCRC

TrEMBL top hitse value%identityAlignment
A0A0A0LJB6 Uncharacterized protein1.3e-3781.25Show/hide
Query:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW
        MT CYGCKP PSGPLPGPIL+LL VVF+LI LSSLFPSEPID SEFQINWPLLAVPI++LVLVR L+S DSS ++YAC CDRGWKM CRCGRG AW
Subjt:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW

A0A2C9UZU5 Uncharacterized protein1.7e-0547.69Show/hide
Query:  PLPGPILVLLTVVFLLIGLSSLFPSEPI-DLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYA
        PLP P+L++L V+ + +G+S  F  E I + +E QINW LLA P++LL LVR+LSS ++S   +A
Subjt:  PLPGPILVLLTVVFLLIGLSSLFPSEPI-DLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYA

A0A2I0LDH6 Uncharacterized protein2.0e-0945.05Show/hide
Query:  CYGCK-PPPS-GPLPGPILVLLTVVFLLIGLSSLFPSEPI-DLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYA-CACDRGWKMQCRC
        CY CK PPPS GP+P  +L+ L +  + I LS L   + + +  E  INW LLAVPI++L +V +LSS D   K Y    C R WK  C C
Subjt:  CYGCK-PPPS-GPLPGPILVLLTVVFLLIGLSSLFPSEPI-DLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYA-CACDRGWKMQCRC

A0A5D3BJW1 Uncharacterized protein8.4e-3780.21Show/hide
Query:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW
        MT CYGCKP PSGPLPGPIL+LL VVF+LI LSSLFPSEPID SEFQINWPLLAVPI++LVLVR LSS DSS ++YAC C+RGWKM CRCG G AW
Subjt:  MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRG-AW

A0A6J1JLC4 uncharacterized protein LOC1114862532.2e-0551.67Show/hide
Query:  PLPGPILVLLTVVFLLIGLSSLFPSE-PIDLSEFQINWPLLAVPILLLVLVRFLSSADSS
        PLP P+L+LL VVF+ +G S     E  ++ +E QINW L A P+LL++L RFLSS D S
Subjt:  PLPGPILVLLTVVFLLIGLSSLFPSE-PIDLSEFQINWPLLAVPILLLVLVRFLSSADSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G21180.1 unknown protein1.4e-0445Show/hide
Query:  PLPGPILVLLTVVFLLIGLSSLFPS--EPIDLSEFQINWPLLAVPILLLVLVRFLSSADS
        PLP P+L++L V  + + LSS + S  E  + +E QIN+ LL +P+ L+VLVR+LSS ++
Subjt:  PLPGPILVLLTVVFLLIGLSSLFPS--EPIDLSEFQINWPLLAVPILLLVLVRFLSSADS

AT2G21185.1 unknown protein2.2e-0537.5Show/hide
Query:  CYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSE-PIDLSEFQINWPLL-AVPILLLVLVRFLSSADSSSKH-YACACDRGWKMQC
        C  C+   S   P P++V++TV  +L+ LSS+   E  +   E  ++W LL AVP+ LL  VR LS  ++S +  Y C C R W+  C
Subjt:  CYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSE-PIDLSEFQINWPLL-AVPILLLVLVRFLSSADSSSKH-YACACDRGWKMQC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAACTGCTACGGATGTAAGCCTCCGCCTTCCGGTCCACTCCCCGGCCCTATCCTCGTGCTTCTCACCGTCGTCTTCCTCTTGATCGGATTGTCCTCTCTGTTCCC
TTCCGAACCGATCGATCTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTCTTCTGCTCGTCCTCGTTCGATTCCTATCATCCGCGGATTCTTCATCGA
AGCACTACGCCTGCGCTTGCGATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGTGCCTGGTAA
mRNA sequenceShow/hide mRNA sequence
GTCTGAACATGATGTAAATATTTTTTAATGAGAAATAGTGGACGCAACTTCATTCATTCCATAAGGCGGTTCAATTACGCCATCAGTCTCCGCTATAAACACCACAGTCT
CTTTCTCTGTTTATTATCCATTTTCAGACCTTCAATCTCCTCTGCAAATCGCCATTGTTGACGATCCGAAGGTCGCGAAATGACTAACTGCTACGGATGTAAGCCTCCGC
CTTCCGGTCCACTCCCCGGCCCTATCCTCGTGCTTCTCACCGTCGTCTTCCTCTTGATCGGATTGTCCTCTCTGTTCCCTTCCGAACCGATCGATCTCTCCGAATTCCAA
ATCAATTGGCCTCTTCTCGCCGTTCCGATTCTTCTGCTCGTCCTCGTTCGATTCCTATCATCCGCGGATTCTTCATCGAAGCACTACGCCTGCGCTTGCGATCGCGGCTG
GAAGATGCAGTGTCGGTGCGGCCGTGGTGCCTGGTAACCTAATTTATAATTGAAATTCGTTTCATCCTTATTGTTGTGTTAATTACTGTTTGGTGTTTGTGTGATGCTGA
TTTAGTTGTGGAAATTCTGAAGGATTTTGATCCATTGCTGTGACTGTAAGAGTTCAAGATGTTTGTGATGTGTTTGTTCTTTGATTTACATATATAAATTAAGGATATAT
AGTTTAATTGATTTATTCTTTCAATTTCGTCTTGGTTTAGGTACGATTAGTTCTTCCCTTTTTTTTTTTTTTAATATGACGATACTTTAATTCTGGAGCTTGGACTTTCT
GGATTTTAATAAGATTTTCACAATATGATAGCGAATAAAACAGAGTTTTATGTTATAAATTTCAACAAGGGGAAAAAACAACTTGAATCGAATAAAACGTGATTCGTCTA
CTTTGGATAAACTTTTCTGGATTTTAATATGATTTTTAGTACATGATAGCAAATAAAGCATAGTTTAAGTTATAAATTTGAAGAACAAGGAAAAAGCTTAAAATTCAATT
TGAATTGAAAAACAATTTGGCGTCGCCCGGACTTGAACCGGAGACCTTTAGTGTGTTAGACTAACGTGATAACCAACTACACCACGACACCAAGTTGAAAAGAATAGCAG
CCGTTAACATTTTGTACAAAT
Protein sequenceShow/hide protein sequence
MTNCYGCKPPPSGPLPGPILVLLTVVFLLIGLSSLFPSEPIDLSEFQINWPLLAVPILLLVLVRFLSSADSSSKHYACACDRGWKMQCRCGRGAW