; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016307 (gene) of Chayote v1 genome

Gene IDSed0016307
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG09:26655399..26656932
RNA-Seq ExpressionSed0016307
SyntenySed0016307
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055958.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-3689.41Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREKKIE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

KAA0062536.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-3689.41Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREKKIE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.0e-3688.24Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREK+IE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.0e-3688.24Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREK+IE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]6.0e-3688.24Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREK+IE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

TrEMBL top hitse value%identityAlignment
A0A5A7STD3 Ty3-gypsy retrotransposon protein1.1e-3587.06Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLP+CKRPE+ GKV+DPNYCKYH+V+SHP+EKCFVLKELILRLAREKKIE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

A0A5A7ULK6 Retrotransposon gag protein1.3e-3689.41Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREKKIE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

A0A5A7V3R7 Ty3-gypsy retrotransposon protein7.1e-3582.56Show/hide
Query:  EQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +++R+ TL+ERQEKVYPFPDSD+ADMLEQLLE +LIQLPECKRPE++GKV+DPNYCKYHRV+SHP+EKCFVLKELIL+LAREKKIE
Subjt:  EQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

A0A5A7V7Z6 Ty3-gypsy retrotransposon protein1.3e-3689.41Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREKKIE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

A0A5D3DWV0 Ty3-gypsy retrotransposon protein1.4e-3588.24Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
        +RRRLTL+ERQEKVYPFP SDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELILRLAREKKIE
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGAAACTACACTGGACCTATCACGCTTATGGAGCAACGACGTCGCCTAACACTTCAGGAAAGACAAGA
AAAAGTCTATCCATTTCCGGACTCCGATATAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGG
TAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCTATCGAGAAATGCTTCGTCTTGAAAGAGTTGATTCTGAGGTTGGCTAGAGAAAAAAAGATTGAG
TGGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGAAACTACACTGGACCTATCACGCTTATGGAGCAACGACGTCGCCTAACACTTCAGGAAAGACAAGA
AAAAGTCTATCCATTTCCGGACTCCGATATAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGG
TAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCTATCGAGAAATGCTTCGTCTTGAAAGAGTTGATTCTGAGGTTGGCTAGAGAAAAAAAGATTGAG
TGGACTTAG
Protein sequenceShow/hide protein sequence
MIKGRNTTSKVLAPRNYTGPITLMEQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIE
WT