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Sed0016329 (gene) of Chayote v1 genome

Gene IDSed0016329
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG08:24602107..24603131
RNA-Seq ExpressionSed0016329
SyntenySed0016329
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]6.4e-0827.32Show/hide
Query:  ERINWIERYHVETRGKENLKSPSSPPLVA----PIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVF
        E + W   +  E R      +P  P LV+    P W   P  +F +NT A+ +   +  G+  + +N  G  +    K   +  +P+ A+AL++  G   
Subjt:  ERINWIERYHVETRGKENLKSPSSPPLVA----PIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVF

Query:  VRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVE-IIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPP
         +   F PT + SD   +V+++       S V  +I+D+    +D +      V R+ NKVAH LA  AL  +G  VW  + P
Subjt:  VRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVE-IIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPP

XP_019175768.1 PREDICTED: uncharacterized protein LOC109171094 [Ipomoea nil]8.4e-0827.22Show/hide
Query:  WKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVEII
        WKP       LNT        +R GL  I +++ G F+A     V        AKA+ +     +++        V +D Q++   + S +  F+   ++
Subjt:  WKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVEII

Query:  EDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWLVSSLCSAL
        +D+ +V+ +        V R  N+ AH++A  A+ V G   WF NPP++LV  L S L
Subjt:  EDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWLVSSLCSAL

XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber]8.4e-0823.86Show/hide
Query:  RSYDRNIAIRGSPFALIQERINWIERYHVETRGKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAP
        R+  R+ A + SP A++Q    W+ RY +E         P+    V+  W P P ++  +N   + + +L+  G+  + ++  G  VA   + +P+PL P
Subjt:  RSYDRNIAIRGSPFALIQERINWIERYHVETRGKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAP

Query:  LQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVE-IIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPP
        L+ +  +   G    +   +    +  D  ++V+ +   + + S ++ +I  +     D     +  V R  NK AH+LA YAL +  + VW    P
Subjt:  LQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVE-IIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPP

XP_023905503.1 uncharacterized protein LOC112017269 [Quercus suber]8.4e-0826.2Show/hide
Query:  LIQERINWIERYHVETRGKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFV
        L+Q  + ++E +       E L +   P      W   P+++F  N   +  + L+  G+  I ++ +G FVA   + + +PL PL+A+A ++  G  F 
Subjt:  LIQERINWIERYHVETRGKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFV

Query:  RQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVEIIEDLCDVLKDS---SITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWL
        +Q   +   + SD  ++ + +N    A  PV I   +  + K S   +  G   V R  N  +H+LA YA+G+V   +W    P +L
Subjt:  RQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVEIIEDLCDVLKDS---SITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWL

XP_024195724.1 uncharacterized protein LOC112198858 [Rosa chinensis]2.0e-0927.71Show/hide
Query:  KSPSSPPLVA--PI-WKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVK
        KS + PP  +  PI W+P    +  +N   +Y ++    G+ C+ QN+ G F+AC V+     + P  A+  +L  G +  +    S     SD  +LV+
Subjt:  KSPSSPPLVA--PI-WKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVK

Query:  EVNSGNHAFSPVEI-IEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWL
         +   +H  S + + IE++  +L+D+    +  V R  NK+AH+LAS+A+    + +W    P ++
Subjt:  EVNSGNHAFSPVEI-IEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWL

TrEMBL top hitse value%identityAlignment
A0A2H9ZZA9 Ribonuclease H protein3.4e-0725Show/hide
Query:  PLLELMKISYGGRSYDRNIAIRGSPFALIQERINWIERYHVETR-GKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFV
        P  EL  I+      +RN  ++G      +E   +   Y VE    +E+  S ++   +  IW P   ++  LN  A         G+  + + + G  +
Subjt:  PLLELMKISYGGRSYDRNIAIRGSPFALIQERINWIERYHVETR-GKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFV

Query:  ACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPV----EIIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYAL
        AC    +  PL P  A+ L++ +  V   +   S  W+  D    +K +       S +    + I+D   +L +S IT    + R  NKVAH LA YAL
Subjt:  ACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPV----EIIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYAL

Query:  GVVGAHVWFHNPPNWL
         +    VW    P ++
Subjt:  GVVGAHVWFHNPPNWL

A0A5B7BZL4 RNase H domain-containing protein1.3e-0931.21Show/hide
Query:  WKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVEII
        W P    L  LN   ++ + L   G+  + QN SG F+A   KC+         +A +L  G +F + +      V SD + L++ + S +      E++
Subjt:  WKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVEII

Query:  EDLCDVL---KDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWLVSSL
          LCDVL   KD  +    KV R  NK A+ LA  +  VV    W  +PP WL S L
Subjt:  EDLCDVL---KDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWLVSSL

A0A5C7GQX3 RNase H domain-containing protein3.1e-0827.32Show/hide
Query:  ERINWIERYHVETRGKENLKSPSSPPLVA----PIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVF
        E + W   +  E R      +P  P LV+    P W   P  +F +NT A+ +   +  G+  + +N  G  +    K   +  +P+ A+AL++  G   
Subjt:  ERINWIERYHVETRGKENLKSPSSPPLVA----PIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVF

Query:  VRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVE-IIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPP
         +   F PT + SD   +V+++       S V  +I+D+    +D +      V R+ NKVAH LA  AL  +G  VW  + P
Subjt:  VRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVE-IIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPP

A0A5C7ICQ3 RNase H domain-containing protein1.2e-0726.7Show/hide
Query:  KPPLLELMKISYGGRSYDRNIAIRGSPFALIQERINW----IERYHVETRGKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNN
        K P  EL+ +      + RN +I GS    + +   W    +  +   +R K   ++ S+   V P W+   +  F +NT A+  SS   +G+  + Q+N
Subjt:  KPPLLELMKISYGGRSYDRNIAIRGSPFALIQERINW----IERYHVETRGKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNN

Query:  SGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPV-EIIEDLCDVLKDSSITGLGKVLRVVNKVAHILASY
             A   + + +   P  A+AL++ +G      + F P  + SD   +V  +       + V  +I D+  +L D     +  VLR+ NKVAH LA  
Subjt:  SGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPV-EIIEDLCDVLKDSSITGLGKVLRVVNKVAHILASY

Query:  ALGVVG
        AL  VG
Subjt:  ALGVVG

A0A803QQL5 Uncharacterized protein5.3e-0828.4Show/hide
Query:  PSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSG
        P+  P  AP W+P P   F LN  A+  +S + TG+  + + +SGS VA   K +       + +AL+LF    +  Q     + V +D  M+   + + 
Subjt:  PSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCVPSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSG

Query:  NHAFSPV-EIIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWLVSSLCSAL
         ++ S   +I+ D+  +L       +  V R  N+ AH LA +ALGV     WF + P+ + S +   L
Subjt:  NHAFSPV-EIIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWLVSSLCSAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGCCTCCACTTCTGGAATTGATGAAGATAAGCTATGGTGGAAGAAGCTATGATCGTAATATAGCCATAAGAGGATCACCTTTCGCCCTAATTCAAGAAAGGAT
AAATTGGATCGAGCGGTACCATGTTGAAACAAGAGGAAAAGAAAATTTGAAATCTCCGTCTTCTCCCCCTCTTGTGGCTCCGATATGGAAGCCAAATCCGATGGCACTCT
TTACTCTAAATACATATGCAAGCTACAGCTCGAGCTTAGATCGAACTGGTTTAAGCTGCATTTTTCAAAACAACAGCGGATCCTTTGTGGCATGTGGGGTTAAATGTGTG
CCATCGCCTTTGGCTCCGCTTCAAGCAAAGGCTTTGAGTCTTTTCCGAGGGGCTGTGTTTGTTCGTCAACACTCGTTCTCCCCAACGTGGGTCGGGTCGGATTTCCAAAT
GTTGGTTAAGGAAGTCAACTCAGGAAACCATGCCTTTTCTCCTGTTGAAATCATTGAAGACCTATGCGATGTTCTAAAGGACTCAAGCATCACAGGATTAGGAAAAGTTC
TTAGAGTAGTAAACAAAGTAGCTCATATTCTAGCTTCTTATGCATTAGGCGTTGTTGGAGCTCATGTGTGGTTCCACAACCCTCCCAACTGGTTAGTTTCAAGTCTTTGT
TCTGCTTTATCAACTTGTAGCCCATTGGGAACCATTTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGCCTCCACTTCTGGAATTGATGAAGATAAGCTATGGTGGAAGAAGCTATGATCGTAATATAGCCATAAGAGGATCACCTTTCGCCCTAATTCAAGAAAGGAT
AAATTGGATCGAGCGGTACCATGTTGAAACAAGAGGAAAAGAAAATTTGAAATCTCCGTCTTCTCCCCCTCTTGTGGCTCCGATATGGAAGCCAAATCCGATGGCACTCT
TTACTCTAAATACATATGCAAGCTACAGCTCGAGCTTAGATCGAACTGGTTTAAGCTGCATTTTTCAAAACAACAGCGGATCCTTTGTGGCATGTGGGGTTAAATGTGTG
CCATCGCCTTTGGCTCCGCTTCAAGCAAAGGCTTTGAGTCTTTTCCGAGGGGCTGTGTTTGTTCGTCAACACTCGTTCTCCCCAACGTGGGTCGGGTCGGATTTCCAAAT
GTTGGTTAAGGAAGTCAACTCAGGAAACCATGCCTTTTCTCCTGTTGAAATCATTGAAGACCTATGCGATGTTCTAAAGGACTCAAGCATCACAGGATTAGGAAAAGTTC
TTAGAGTAGTAAACAAAGTAGCTCATATTCTAGCTTCTTATGCATTAGGCGTTGTTGGAGCTCATGTGTGGTTCCACAACCCTCCCAACTGGTTAGTTTCAAGTCTTTGT
TCTGCTTTATCAACTTGTAGCCCATTGGGAACCATTTCAAATTAA
Protein sequenceShow/hide protein sequence
MGKPPLLELMKISYGGRSYDRNIAIRGSPFALIQERINWIERYHVETRGKENLKSPSSPPLVAPIWKPNPMALFTLNTYASYSSSLDRTGLSCIFQNNSGSFVACGVKCV
PSPLAPLQAKALSLFRGAVFVRQHSFSPTWVGSDFQMLVKEVNSGNHAFSPVEIIEDLCDVLKDSSITGLGKVLRVVNKVAHILASYALGVVGAHVWFHNPPNWLVSSLC
SALSTCSPLGTISN