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Sed0016416 (gene) of Chayote v1 genome

Gene IDSed0016416
OrganismSechium edule (Chayote v1)
Descriptionprotein LOL2
Genome locationLG01:15736527..15740040
RNA-Seq ExpressionSed0016416
SyntenySed0016416
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]2.6e-5579.58Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        ++V EI+KDEDDGPPPGWEPI P  P            PPPP LSS+MAQMVCG+CRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCTSVTEIGVHNRRPPWS+ QGQA PPTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

XP_022140183.1 protein LOL2 [Momordica charantia]3.9e-5983.8Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        +E QEID DEDDGPPPGWEPI P           PPPPPPPPPLSS+MAQMVCGSCRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCT+VTEIGVHNRRPPWS+QQGQATPPTNV Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]1.4e-5680.99Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        +E+ EI+KDEDDGPPPGWEPI PP            P PPP PLSS+MAQMVCG+CRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCT VTEIGVHNRRPPWS+QQGQA PPTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

XP_023001758.1 protein LOL2 [Cucurbita maxima]1.2e-5580.28Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        +E+ EI+KDEDDGPPPGWEPI PP            P  PP PLSS+MAQMVCG+CRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCT VTEIGVHNRRPPWS+QQGQA PPTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

XP_038893782.1 protein LOL2 isoform X1 [Benincasa hispida]2.4e-5681.69Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        ++V EI+KD+DDGPPPGWEPI  P P        PPPPPPPPPLSS+MAQMVCG+CRRLLKYLKGA YVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCTSVTEIGVHNRRPPWS+QQGQA  PTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein1.3e-5579.58Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        ++V EI+KDEDDGPPPGWEPI P  P            PPPP LSS+MAQMVCG+CRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCTSVTEIGVHNRRPPWS+ QGQA PPTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

A0A5A7UQS3 Protein LOL2 isoform X42.0e-5378.17Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        ++V EI+KDEDDGPPPGWEPI P  P            PP P LS +MAQMVCG+CRRLLKYLKGARYVQCS CSTVN+VLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCTSVTEIGVHNRRPPWS+QQGQA PPTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

A0A6J1CHF4 protein LOL21.9e-5983.8Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        +E QEID DEDDGPPPGWEPI P           PPPPPPPPPLSS+MAQMVCGSCRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCT+VTEIGVHNRRPPWS+QQGQATPPTNV Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

A0A6J1EMN3 protein LOL26.7e-5780.99Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        +E+ EI+KDEDDGPPPGWEPI PP            P PPP PLSS+MAQMVCG+CRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCT VTEIGVHNRRPPWS+QQGQA PPTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

A0A6J1KRG9 protein LOL25.7e-5680.28Show/hide
Query:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
        +E+ EI+KDEDDGPPPGWEPI PP            P  PP PLSS+MAQMVCG+CRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY
Subjt:  LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY

Query:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ
         YGASSVRCSSCT VTEIGVHNRRPPWS+QQGQA PPTN  Q
Subjt:  QYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL21.4e-3054.74Show/hide
Query:  ERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEM---AQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCA
        E  + +E +++E++GPPPGWE         PPP+ T      P P + E+   AQMVCGSCRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C 
Subjt:  ERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEM---AQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCA

Query:  VLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSIQQG
        +LLMY YGA +VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSIQQG

P94077 Protein LSD11.3e-1743.75Show/hide
Query:  PPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWS
        PPPPPP   +MA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMY YGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWS

Query:  IQQ--GQATPPT
          +  G A PP+
Subjt:  IQQ--GQATPPT

Q0J7V9 Protein LSD17.4e-2157.69Show/hide
Query:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG
        P   +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMYQYGA SV+C+ C  VT +G
Subjt:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG

Q704V3 Protein LOL56.1e-2350.75Show/hide
Query:  DDGPPPGWEPIAPPQPTPPPPLSTP-PPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRC
        D+   P   P +    +P    S P  PPPP P L+ E+ QMVCGSCR LL Y +GA YV C+CC T+NYVLEAHEVG+V CG CA LLMY +GA +V+C
Subjt:  DDGPPPGWEPIAPPQPTPPPPLSTP-PPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQS
        S C  VTEIG  N R   SI+Q   T  + + ++
Subjt:  SSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQS

Q93ZB1 Protein LOL15.1e-2260.26Show/hide
Query:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG
        PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQYGA SV+C+ C  VT +G
Subjt:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 13.7e-2360.26Show/hide
Query:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG
        PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQYGA SV+C+ C  VT +G
Subjt:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 13.7e-2360.26Show/hide
Query:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG
        PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQYGA SV+C+ C  VT +G
Subjt:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 13.7e-2360.26Show/hide
Query:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG
        PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQYGA SV+C+ C  VT +G
Subjt:  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein9.3e-1943.75Show/hide
Query:  PPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWS
        PPPPPP   +MA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMY YGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWS

Query:  IQQ--GQATPPT
          +  G A PP+
Subjt:  IQQ--GQATPPT

AT4G21610.1 lsd one like 29.6e-3254.74Show/hide
Query:  ERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEM---AQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCA
        E  + +E +++E++GPPPGWE         PPP+ T      P P + E+   AQMVCGSCRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C 
Subjt:  ERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEM---AQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCA

Query:  VLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSIQQG
        +LLMY YGA +VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSIQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGATTGGAGGTCCAAGAAATCGACAAAGACGAAGATGACGGACCCCCTCCTGGATGGGAGCCCATCGCTCCGCCGCAACCGACTCCACCGCCGCCGCTATCGAC
TCCACCACCGCCGCCGCCGCCGCCGCCACTTTCTTCTGAGATGGCACAAATGGTCTGTGGTTCGTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCTAGATATGTTCAGT
GCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCTCACGAGGTTGGACAAGTTAAGTGTGGTTCTTGTGCAGTGTTGCTTATGTACCAATATGGAGCATCATCCGTT
AGGTGTTCCTCGTGTACTAGTGTGACTGAAATTGGGGTGCATAACAGACGCCCACCGTGGTCGATTCAGCAGGGACAAGCAACCCCTCCTACCAATGTTCAGCAGAGCCT
GATTTAG
mRNA sequenceShow/hide mRNA sequence
GTGCGACAACAGTTCTCCGTAACAGCGCGGGAGGTTTCTATGGTGAATTCTGCGAGAACGACAAATGGAGAGATTGGAGGTCCAAGAAATCGACAAAGACGAAGATGACG
GACCCCCTCCTGGATGGGAGCCCATCGCTCCGCCGCAACCGACTCCACCGCCGCCGCTATCGACTCCACCACCGCCGCCGCCGCCGCCGCCACTTTCTTCTGAGATGGCA
CAAATGGTCTGTGGTTCGTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCTCACGAGGT
TGGACAAGTTAAGTGTGGTTCTTGTGCAGTGTTGCTTATGTACCAATATGGAGCATCATCCGTTAGGTGTTCCTCGTGTACTAGTGTGACTGAAATTGGGGTGCATAACA
GACGCCCACCGTGGTCGATTCAGCAGGGACAAGCAACCCCTCCTACCAATGTTCAGCAGAGCCTGATTTAGGAACAAACTGGCGTTTTTAATTTTAAATTTTTTTTCCCT
TTGCAGCCTTAACATTATCTATGGCTTGTGACTTGATTTCCTACTTTTTATCACTTTTCTCTGCTGCTGATTTGTTGTTCATTGTAAGTGAATATTCTTATTTAAAGTAG
CAGCACGATGTAAACATCGAAGAAATTGATCAAAAAAGCATGACATCCCCAAGGAGTTGCATAGTGGTTGAAAACTTGGATTTTGAGGGTATACTTGCCTTAATGTACCA
GGTTCGAGACTCAACTGTGACATTATTCCTTTGATGTCTCCAGGTGCCTAACCTAGAGATGGACATGGTTATGGTTACCCTTGTTTAAAAAAAACAGCTGTCTATGACAT
GAACTAAACTTGATATCAATTCTTGGACTTTGGCCGTTTTTAGCTGCAGGATTTGGTGTTTTATGAACCGGATCTTGTGGACATGTGTACTTGAGAGACGATTCAGATTT
GCACTTAAATAAAATTGTTTTATGGAA
Protein sequenceShow/hide protein sequence
MERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSV
RCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQSLI